Malus domestica (apple): 103430194
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Entry
103430194 CDS
T03194
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
mdm
Malus domestica (apple)
Pathway
mdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103430194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103430194
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
103430194
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
103430194
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
S1
Motif
Other DBs
NCBI-GeneID:
103430194
NCBI-ProteinID:
XP_008366552
LinkDB
All DBs
Position
11:join(39348977..39349131,39349271..39349372,39349476..39349521,39349656..39349745,39350233..39350298,39350394..39350459,39350573..39351022)
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AA seq
324 aa
AA seq
DB search
MKDLQLSLNQTQKVRLHRALEKLESLASKANSNASVTVADSIPVNYEDGLLKGHGTSEVN
GEVVATVCGVVERVNKLVYVRSLRARYKPEVGDIIVGRVIEVAPKRWRVEINYSHDAVLM
LSSMNLPDGIQRRRTALDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLGRGQ
LLTVPSYLVKRRKQHFHHLENYGIDLILGCNGFIWVGEHVEVTDDMLVDHKSQQHDTKAD
KNSISPEDQEKNYTTQQTRENICRTANAIRALSTLGFSITVEVIMETVDLSSSINVAIHE
MLGAEFCVLVAEKEAVRRSMTKKK
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttacagctttcgctgaaccaaacccagaaggtccggctacatagagctctc
gaaaagctcgagtctttggcttcaaaggccaattccaacgcttccgtcaccgtcgccgat
tccatccccgttaactacgaagacggccttctcaagggacatgggacctctgaggtcaat
ggggaagttgttgcgacggtttgcggcgtcgtcgagagagtcaataagctggtttatgtg
cgttctttaagggccaggtacaaaccagaggttggagatatcatagtggggcgtgttatt
gaggttgctccgaagcgttggagagtggagataaactatagccatgatgcagtgttgatg
ctttcttcgatgaacttacctgacggcatacagaggcgccgaactgccctggatgaactc
aacatgcgcagcatttttgaagagaatgatgtcatttgtgctgaagttcgtggtttccaa
catgatggtttacatctccaagcaagaagtcagaagtatggaaagcttggaaggggtcag
ttgctcacagttccttcttatctagtgaaacgacgaaagcagcacttccatcatctagaa
aactatggcattgacctgatactcggctgtaatggtttcatctgggttggtgaacatgtt
gaagttactgacgatatgctagtagatcacaagtctcaacaacatgataccaaagccgat
aaaaattccattagtcccgaagatcaggagaaaaactacactacgcaacagacaagagag
aacatatgcagaactgcaaatgctatccgcgcattgtctacattaggcttcagtattacc
gtagaagtgatcatggagacggtagacttgagcagttctataaatgttgctatacatgaa
atgctcggcgcagagttttgtgttctggttgcagaaaaggaggctgtgcgacgaagcatg
actaaaaagaagtaa
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