Malus domestica (apple): 103431933
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Entry
103431933 CDS
T03194
Name
(RefSeq) LOW QUALITY PROTEIN: phytochrome B
KO
K12121
phytochrome B
Organism
mdm
Malus domestica (apple)
Pathway
mdm04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
103431933
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Gene cluster
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_4
PAS_9
PAS_3
PAS_8
Motif
Other DBs
NCBI-GeneID:
103431933
NCBI-ProteinID:
XP_008368332
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Position
16:complement(12199315..12205428)
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AA seq
1120 aa
AA seq
DB search
MASGAQSSGTSNIKAHHNTESVSKAIAQYTVDARLHAVFEQSGESGKSFDYSQSMKTTKD
SVPEQQITAYLSKIQRGGHVQPFGCMMAVDEATFGVIAYSENARDMLDLTPQSVPILEKP
EILTIGTDVRTLFTPSSAVLLEKAFGAREITLLNPIWIHSKISGKPFYAILHRIDVGVVI
DLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRELTGYDRVM
VYKFHEDEHGEVVAESKRPDLDPYLGLHYPATDIPQASRFLFKQNRARMIVDCHAKPVHV
IQDEGLMQPLCLVGSTLRAPHGCHSQYMANMGSIASLALAVIINGNDEEALGGRNSMRLW
GLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNXELQLASQMSEKHVLRTQTLLCDMLLR
DTPTGIVTQSPSIMNLVKCDGAALYYQGNYYPLGVTPTEAQIKDIVEWLLASHGSSTGLS
TDSLADAGYPGAASLGDAVCGMAAAYITKRDFLFWFRSHTGKEIKWGGAKHHPEDKDDGQ
RMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQIILRDSFKNTETNNTNAVMRAQLGDL
EFQGINELSSVAREMVRLIETATAPILAVDVNGCINGWNAKVAELTGLSVEEATGKSLVH
DLIYKESEEIVEKLLTRALKGEEDKNVEIKMRTFGPEHDNKPVFIVVNACSSKDYANNMV
GVCFVGQDVTGQKVIMDKFIKIQGDYKAIVHSPNPLIPPIFASDDNTCCSEWNTAMEKLT
GWNQGEILGKMLVGEVFGSCCRIKGPDAMTKFMIVLHNAIGGLDTDKFPFSFFDRNGKYV
QALLTANKRVDTEGQVIGAFCFLQIASPELQQTLKVQKQQENECLSRMKELAYICQEVKN
PLSGIRFTNSLLEATDLTEDQKQFLETSAACEKQILKIIKDVDLDSIDDGSLELEKTGFL
LGSVINAVVSQVMLLLRERDLQLIRDIPEEIKTLAVYGDQVRIQQVLADFLLNMVRYAPS
PEGWVEIHVLPSLKKVPDGITLVHTEFRLACPGEGLPPQLVQDMFHSSQWMTQEGLGLSM
CTKILKLMNGEVQYVRESERCYFLITLELPMPRRPTNSID
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaggagctcagtcgtcgggcacgagcaatatcaaggctcaccacaacacggag
tctgtgagcaaagccattgctcagtacactgtagatgctcggctgcacgccgtgttcgag
cagtccggggagtccggcaagtcgttcgactactcgcagagcatgaaaaccaccaaagat
tccgtcccggagcagcagattacggcgtacctgtcgaagattcagaggggcggccatgtc
caacctttcgggtgcatgatggccgtggacgaagccacgttcggagtcattgcgtatagc
gagaacgcacgcgacatgctcgacctaacgccgcagtcagtgccgatccttgaaaagccg
gagattctcacaattgggaccgacgtccgtacgctattcacaccgtcgagcgcggtgttg
ctggagaaggcatttggggctcgggagataacccttttgaacccgatttggatccactct
aagatttctggaaagcccttttacgcaattttgcataggattgatgttggggtcgtgatt
gatttggagcctgcgagaacagaagaccctgcgctgtcgattgccggcgcggtgcagtcg
cagaagctggcggtgagggcgatttcgcagctgcagtcgctgccgggcggcgacattaag
cttttgtgtgacactgtggtagagagtgtgagggagcttactggctatgatagagttatg
gtttataagtttcacgaggatgagcatggtgaggttgtggctgagagtaaaaggcctgac
ttggacccataccttgggctgcactacccggccacggatataccacaggcgtcaaggttc
ttgttcaagcagaaccgggctcgaatgatagtagattgtcacgccaagccggttcatgtg
attcaggatgaagggctgatgcagcctttgtgcttggttggatccacactaagagcccca
catggttgccattcccagtacatggctaatatgggatccattgcgtcattggcgttggcg
gtaatcatcaatggaaacgacgaggaagctcttggtgggagaaattcaatgagattatgg
ggcctggttgtttgccatcacacctctgctcggtgcattccatttccgcttcggtatgct
tgtgagtttttaatgcaggcctttggacttcaattgaatnnggaattacaattggcttca
caaatgtctgagaaacatgttttaaggacacagactctgttgtgtgatatgcttctgcgt
gataccccaactggcattgttactcaaagtcctagtataatgaaccttgtgaaatgtgat
ggggctgcactctactaccaagggaactactaccctcttggtgtgacgcccaccgaagcc
cagataaaggacattgtggagtggttgttggcttcccatggaagttcaactggtttgagt
acagatagtttggctgatgccgggtaccctggagctgcctctcttggtgatgcagtttgt
ggaatggcggctgcttatattactaaaagggattttctgttctggttccgatcccacact
gggaaagagatcaaatggggtggagcaaagcatcatccagaggacaaggatgatgggcag
aggatgcatccacgctcttcattcaaagcgtttttggaagtggttaaaagccggagcttg
ccatgggagaatgcagaaatggatgcaatacactctttgcagattattttgcgtgactca
tttaagaacacagagacaaacaatacaaatgctgttatgcgggcccagcttggcgatctg
gagtttcaagggatcaatgagctcagctccgtagcaagagaaatggttaggttgatagag
actgcaactgctcccatacttgctgtcgatgttaatggctgtataaatgggtggaatgca
aaggttgcagagttgaccggtctctcagttgaggaagctaccgggaagtccttggttcac
gatctcatttacaaagaatctgaagaaattgttgaaaaacttctaacccgcgctttaaaa
ggtgaagaagataagaatgtcgaaatcaaaatgaggacatttggcccagagcatgataac
aagcctgtcttcatagtggttaatgcttgctctagcaaggattacgctaataacatggtt
ggagtttgctttgttggtcaggacgttactggtcaaaaagtaataatggacaaattcata
aaaatacaaggtgattacaaagccattgttcatagccccaatcctttgatccctcccata
tttgcttcagatgataacacatgttgctcggaatggaacactgccatggaaaagctcact
gggtggaaccagggagaaatccttggaaaaatgttggttggagaggtcttcggcagttgc
tgtcgaatcaagggtccagatgctatgacaaaattcatgattgtcttgcacaatgccatt
ggagggctagacacagacaaattccccttttcgttctttgaccggaatgggaaatatgta
caagctctcttgacagcaaataagagggtggatacagaaggtcaggttattggagctttc
tgctttttgcagattgctagtccggaactgcagcaaactcttaaagtacagaagcaacaa
gaaaatgaatgtttatctaggatgaaagaattggcttacatttgccaggaagtaaaaaat
cctttaagtggtatacgctttactaactcacttttggaggctacggacttaactgaagac
caaaagcagtttctggagactagtgctgcttgtgagaagcaaattttgaagattataaaa
gatgttgatctggatagcattgacgatggatcactggagcttgagaagacaggattctta
cttgggagcgttataaacgctgttgttagccaagtaatgttattgctcagagaaagagat
ctacaattgattcgagatattcctgaagaaatcaaaacattggccgtctatggtgatcaa
gtgagaattcaacaggtcttggctgatttcttattgaatatggtacgttatgcaccctct
cctgaaggctgggtggagattcatgttcttccaagcttgaagaaagtaccggatggaatc
actctggttcatactgaattcaggttggcatgtcctggcgaaggtctccctcctcaatta
gttcaagacatgttccatagcagtcaatggatgactcaggaaggtcttggactgagcatg
tgcacgaagattttaaagctcatgaacggtgaagtccaatatgtcagagagtcagaaaga
tgttatttcttaattactcttgagcttcctatgcctcggagacctacaaatagtattgac
tag
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