KEGG   Malus domestica (apple): 103432731
Entry
103432731         CDS       T03194                                 
Name
(RefSeq) replication factor C subunit 3 isoform X1
  KO
K10756  replication factor C subunit 3/5
Organism
mdm  Malus domestica (apple)
Pathway
mdm03030  DNA replication
mdm03410  Base excision repair
mdm03420  Nucleotide excision repair
mdm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103432731
   03410 Base excision repair
    103432731
   03420 Nucleotide excision repair
    103432731
   03430 Mismatch repair
    103432731
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mdm03032]
    103432731
   03036 Chromosome and associated proteins [BR:mdm03036]
    103432731
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103432731
DNA replication proteins [BR:mdm03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    103432731
  DNA Replication Termination Factors
   ELG1-RFC complex
    103432731
Chromosome and associated proteins [BR:mdm03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    103432731
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     103432731
  Check point factors
   HRAD17(Rad24)-RFC complex
    103432731
SSDB
Motif
Pfam: RFC_C DNA_pol3_delta2 RCF1-5-like_lid AAA Rad17 Sigma54_activ_2 AAA_lid_RFC1 Mg_chelatase DUF815 RuvB_N ABC_tran nSTAND6 RsgA_GTPase AAA_29 AAA_22 AAA_23 AAA_5 AAA_2 AAA_24 SprT-like T2SSE AAA_16
Other DBs
NCBI-GeneID: 103432731
NCBI-ProteinID: XP_028956735
LinkDB
Position
04:join(4743437..4743520,4743598..4743708,4744178..4744210,4744906..4745074,4745394..4745575,4745688..4745824,4745957..4746055,4747844..4747913,4748127..4748201,4753549..4753594,4754472..4754530)
AA seq 354 aa
MLWVDKYRPKTLDQAIVHQDIAQNLKKLVAEQDCPHLLFYGPSGSGKKTLIIALLRQVFG
PSADKVKVENRAWKVDAGSRTIDIELTTLSSTNHIELNPSDAGFQDRYIVQEIIKEMAKN
RPIDTKGKKGYKILVLNEVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSKVTEAIRSR
CLNVRINAPTEDQIVKVLEFIGKKEVLQLPSGFTARIAEKSNRSLRRAILSLETCRVQQY
PFTSNQSIPPMDWEEYVSEIASDIMKEQSPKRLYQVRQKLYELLLNCIPPEIILKRLLYE
LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHLEAFVAKFMSIYKAFLIEAFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgctgtgggtagacaagtaccgacccaaaaccctagaccaggcaattgtccaccaagac
atcgcccaaaacctcaagaaactcgttgcagagcaggattgcccccatttgctcttttat
ggcccttccggctccggcaagaaaaccctcatcatcgccctcctccgtcaggttttcggt
cccagcgccgataaggtgaaagtggaaaatagggcatggaaagttgatgctgggagcaga
accattgatatagagctgactacattgtcaagcacaaaccatattgaattgaaccccagt
gatgcaggctttcaggatagatatattgtccaagagataattaaagaaatggctaaaaat
aggcccattgacacaaaagggaaaaaaggatataaaatcttagtgctgaatgaagttgac
aagctttcaagagaagcgcagcattctcttcgaagaactatggagaaatatagtgcttat
tgccggctaatactatgctgtaacagttcttcaaaggttactgaagcaatccggtctcgg
tgtctaaatgtgcgaataaatgcaccaacagaagaccagattgttaaggtattggagttc
attggaaagaaggaagtgctgcaacttccttctggattcactgctcgtatagctgaaaaa
tcaaataggagcttaaggagagctatattgtccttagaaacttgtcgtgtccaacagtat
ccctttacaagtaaccaatcgatacccccaatggactgggaggaatatgtttctgaaatc
gcctctgatataatgaaggagcagagcccaaaaaggctttatcaggtgcggcagaagctg
tatgagctacttctaaattgtattcctccagagatcatcttgaagaggctgctttatgag
ttattgaagaaattggatgcagaactgaagcatgaggtctgccattgggctgcatattac
gaacacaggatgcgtcttgggcagaaagcaatatttcacctggaagcattcgtggcgaag
ttcatgagcatctataaggctttcctcattgaagcgtttggctga

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