KEGG   Malus domestica (apple): 103433069
Entry
103433069         CDS       T03194                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103433069
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103433069
   03012 Translation factors [BR:mdm03012]
    103433069
Enzymes [BR:mdm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     103433069
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     103433069
Translation factors [BR:mdm03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    103433069
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD dsrm HA2_N AAA_22 nSTAND3 ATPase AAA_19 AAA_16 T2SSE AAA_23 Myosin_head ABC_tran PhoH
Other DBs
NCBI-GeneID: 103433069
NCBI-ProteinID: XP_008369509
LinkDB
Position
04:join(10572240..10572491,10572653..10572807,10572900..10572987,10573100..10573336,10573474..10573569,10577992..10578180,10578335..10578494,10578647..10578777,10579190..10579360,10584507..10584779,10586070..10586264,10586670..10586873,10587367..10587436,10587536..10587684,10588801..10589109,10589204..10589263,10589999..10590151,10590265..10590375,10590569..10591039)
AA seq 1157 aa
MRNSRAALGLLLKSVSNNNPCCCFPSSRKTNGRCRTLLLLLQPHSSSSISDGGARFLISK
RAFCGYAAEQFSDDEYTCEFEGQKASSSVANIDEWKWKMSLLLRSEKDQEIVSRDKRDRR
DYEQISNLAKRMGLYCEIYGKAVVASKVPLPNYRPDLDDKRPQREVVIPLGLQRRVEGLL
QEHLDRLQLNSGKFTGNRGDSEHLGQVENANLDENADSLLDGSVMEKVLQRRSLRMRNMQ
RAWQESPEGKKMLDFRKSLPAFKENERLLQAIARNQVIVISGETGCGKTTQLPQYILESE
IESGRGAFCSIICTQPRRISAMAVAERVSAERGEPLGETVGYKVRLEGMKGKNTHLLFCT
SGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNA
ELFSSYFGGAPTIHIPGFTYPVRAHFLEDVLEMTGYKLTSFNQIDDYGQDKLWKTQKQLV
PRKRKNQITALVEDALNKSSFESYSGRARDSLSCWTPDCIGFNLIEAVLCHISRKERQGA
VLVFMTGWEDISSLRDQLKAHPLLGDPNRVLLLTCHGSMGTSEQKLIFGRPPPNIRKIVL
ATNMAEASITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISQASARQRRGRAGRVLPG
ECYHLYPKCVYHAFAEYQLPELLRTPLNSLCLQIKSLQVASIGEFLSAALQPPEPLAVQN
AIGFLTSIGALDENENLTSLGKYLSILPVDPKLGKMLIMGAVFHCFDPVLTIVSGLSVRD
PFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTL
QAIHSLRKQFNYILRDAGLVDADASINNKLSHNQSLVRAIICSGLFPGIASVVHRETSMS
FKTMDDGQVLLFANSVNVRYQTIPYPWLVFGEKVRVNTVFIRDSTGVSDSILILFGGALN
HGVQAGHLRMLDGYIDFFMDPSLVDCYLKLKEELNELIQKKLEDPSLDIHKEGKYLMLAV
QELVSGDQCEGRFVFGRDSRKPKESGDNSRFTKDGTNPKSLLQTLLMRAGHSPPKYKTKH
LKTNEFRALVEFKGMQFVGKPKKNKQLAERDAAIEALAWLTHTSENHRDEEDNSPPDVTD
NMLKLLGKRRRSKRQSG
NT seq 3474 nt   +upstreamnt  +downstreamnt
atgcgtaattcgagggcagcacttggtctccttctcaagtcagtctccaacaataaccct
tgttgttgttttccttcgtcccggaagacaaacggtcgctgccgcactttgcttcttcta
ctccaaccccactcttcttcttcaatttccgacggcggagcccgattcctcatttcaaag
cgcgccttttgcgggtatgccgccgagcagttctccgacgatgagtacacgtgcgaattc
gaaggccaaaaggcatcatcttcggtggcgaacattgacgagtggaaatggaaaatgagc
ttgctattacgcagcgaaaaggaccaagagattgtatccagagataagagagataggagg
gactatgagcagatatctaaccttgccaaaaggatgggactttattgtgaaatatatggg
aaagcggtggtggccagcaaggtccctcttccaaactacaggcctgatttggatgataag
cggccacaaagagaggtggttatccctcttggcttgcaaaggagggtagagggtttgctg
caagagcaccttgatcgactccagttaaactctgggaagttcactggaaatagaggggac
tctgagcaccttggtcaggtcgaaaatgcaaacctggatgagaatgcagattctcttcta
gatgggtctgtaatggagaaggttcttcaaaggaggagtttgcgaatgcgtaatatgcaa
agagcttggcaggaatcacccgaaggcaagaagatgctagacttccgcaaatcactaccg
gctttcaaggagaatgaaaggttgctgcaagcaattgcacggaatcaggtaatagtgata
tctggggagactggatgtggtaagaccactcaacttcctcaatatatcctagagtcagaa
atagaatctggccgtggagcattctgtagcatcatttgcacacagcctcgaagaatatct
gctatggctgttgcagaaagagtgtcggcagagaggggagagcctcttggtgaaacagtt
ggctataaagttcgattggagggaatgaagggaaaaaatacccatctgcttttttgtaca
agtggtattttacttcgccgtctgttgagtgatcgtaacttgaatggtataacccatgtt
tttgttgatgaaattcatgagcgaggcatgaatgaagatttcttattgattgtgctgaag
gatctgcttccacgccgtcgggatttgagattggttttaatgagtgctactctgaatgct
gagctgttttcaagttattttggaggagctcctacaattcatattccgggctttacatat
ccagtaagagcacactttttagaagatgtactggaaatgactggatataagttgacttcc
ttcaaccaaattgatgattatggccaagacaaactgtggaaaacacagaagcagttagtg
cctcggaaaaggaaaaaccagattactgctctggttgaggatgctcttaataaatcaagc
tttgagagttacagtggcagggcacgtgattcactatcatgttggacacctgattgcatt
ggatttaatttaatcgaggcagttttatgccatataagtcggaaggaacgacaaggtgct
gttttagtattcatgactgggtgggaggatataagctctttgagggatcaacttaaagca
catccacttttaggtgatcctaacagggttttgcttctaacatgccatgggtcaatggga
acatctgaacagaaactcatatttggaagaccacctcctaacattcgtaaaatagtcctt
gcaacaaatatggcagaagcaagtattacaatcaatgatgtagtttttgtggtggattgt
ggaaaagcaaaagagacctcgtatgatgctttgaataatacaccttgtctgctaccttct
tggatatcgcaagcatctgctcggcaaagaaggggtagggctggccgggtgctgccaggc
gaatgttaccacctttatcccaaatgtgtttatcacgcttttgctgaatatcaacttcct
gaactgctcagaactcctttgaactctctttgcttgcaaattaaaagtttgcaggttgct
agtataggggaattcttgtcagctgccttgcagccaccggaacccctagctgtccaaaat
gccattggttttcttacttcaattggggcattagatgagaatgaaaatttgacaagtctg
ggaaaatatttgtcaatacttccagtggatcccaaactagggaaaatgctgattatgggt
gctgtgtttcattgctttgatcctgttcttacaatagtgtctggtctaagtgtcagggat
cctttccttttgcctcaagacaaaaaagatttagcagggacagcaaaatctagattctct
gcaaaagattacagtgatcatatggctcttgttcgtgcatatgaaggatggaaagatgct
gaaagagaaggatcagcatatgaatattgctggagaaatttcctttctgctcaaacactt
caggctatccattctcttcggaagcagtttaactacattttaagagatgctggattggtg
gatgcggatgcaagcattaacaacaagctaagtcacaaccagtccttggttcgtgcaatc
atatgttctggacttttccctggaatagcatctgtggtgcaccgagagacgtccatgtca
ttcaaaacgatggatgatggccaggttctactatttgctaattctgtgaatgtgcgttac
caaacaattccttacccctggttggtctttggtgagaaagtaagggtcaatactgtattc
atacgtgattccactggcgtatctgattcgatcctgatcctttttggtggtgcgttgaac
catggggtccaggctgggcatttgagaatgttggacggttatatcgacttcttcatggat
cctagtttggtggactgctatttgaagcttaaggaagaacttaatgagcttattcaaaag
aagcttgaagatcctagccttgatatccacaaggaagggaagtaccttatgcttgctgtt
caagagctggtttccggagatcaatgtgaagggagatttgtatttggtcgtgacagcaga
aagccgaaggaatctggtgataacagtagattcactaaagacggaaccaatcctaagagt
ttgcttcaaactctgttgatgagagcaggacattctcctccaaagtacaaaacaaagcac
cttaagacgaatgagttcagagcactggtggagttcaagggcatgcaatttgtcgggaaa
cctaagaaaaataagcagcttgcagaaagggatgctgctatagaagcactggcctggttg
actcatacctcagaaaaccatcgcgatgaagaagacaactccccccctgacgtcactgac
aatatgctcaaacttctcgggaaacgtagaagatcaaaacggcagtctggttga

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