KEGG   Malus domestica (apple): 103433074
Entry
103433074         CDS       T03194                                 
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
  KO
K14327  regulator of nonsense transcripts 2
Organism
mdm  Malus domestica (apple)
Pathway
mdm03013  Nucleocytoplasmic transport
mdm03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    103433074
   03015 mRNA surveillance pathway
    103433074
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103433074
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     103433074
   mRNA cycle factors
    P-body specific factors
     103433074
SSDB
Motif
Pfam: MIF4G Upf2 Glycos_transf_N
Other DBs
NCBI-GeneID: 103433074
NCBI-ProteinID: XP_008369526
LinkDB
Position
01:complement(join(22754194..22754700,22754951..22755424,22755659..22755844,22756313..22756483,22757175..22757393,22757490..22757741,22758389..22758490,22758609..22758806,22758952..22759230,22759530..22759611,22760614..22760790,22761624..22761751,22761893..22761997,22762184..22762528,22763391..22763593,22764484..22764571,22765095..22765157))
AA seq 1192 aa
MEHHEEEGGAGSEPHGKQDDEEAAARLEEVKKSIEAKMALRQSNLNPERPDTGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMDDLRGVNLSKFVSEAVTAICDAKLRSSDIQAAVQIC
SLLHQRYKDFSPTLLQGLLKVFFPGKSGDDLEADKNLRAMKKRSTLKLLVELFFVGVIED
GGVFLNIIKDLTSGEHLKDRDTTQTNLTLLASFARQGRMFLGLPLSGPEIHEEFFKGLSI
TTDQKKFFRKAFQTYYVAAAELLQSEHTSLRQMEHENAKILNAKGELSDESVSSYEKLRK
SYEHLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEDASSAAAGKDSSALEAIWDDEDTR
AFYECLPDLRAFVPAVLLGEAESKSSDQSAKTQEQSTEPALESDQSQQTTEDTGEASADV
GALQEGKTIEKGKDKEEKEKDKIKDPDKEKGDRKGEHEKEKLKSIEGTNLDALLQRLPGC
VSRDLIDQLTVEFCYLNSKANRKKLVRAVFNVPRTSLELLAYYSRLVATLSTCMKDVSSM
LLAMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFSHHN
IDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPE
RSARVTKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWGECEPYLLKCFLKVHKGKY
GQIHLIASLTAGLSRYHDEFAVSVVDEVLEEIRLGLELNEYGMQQRRIAHMRFLGELYNY
EHVDSSVIFETLYLTLAFGHGTPEQDVLDPPEDCFRMRMVITLLETCGHYFDRGSSKRKL
DRFLMHFQRYILSKGVLPLDVEFDLQDLFADLRPNMTRYSSIEEVNAALVELEERDHTVS
IDKNNNEKHSDTEKPSRRNTSNKMSVNGKSVVNGTEENGVDHGDLGDSDSDSGGGTINRD
RHDEEGLGEENHDGGSDSNEDDDDDGGGGPVSDEDDEVHVRQKVAEVDPQEAEKFELDLK
AVMQESMEQRRLELRSRPTLNMTIPMNVFEGSTKDHHGRVVGGESGDEALDEESGGSKEV
QVKVLVKRGNKQQTKQMYIPRDCSLIQSTKQKEAAELEEKQDIKRLVLEYNDREEEELNG
LGNQTLNYMQSGGNRLAGRGSTWEGTSGRGGGARHRYHSSYSGGGVYYSRKK
NT seq 3579 nt   +upstreamnt  +downstreamnt
atggagcaccatgaggaggaaggcggtgctggcagtgaacctcatgggaagcaagatgat
gaggaagctgctgctcggcttgaggaagtcaagaaatctattgaggcaaagatggctctt
cgtcaaagcaatctgaaccctgagcggcctgacacaggatttctgaggacattggattct
agcattaagcgcaacacagcggttattaaaaaactgaagcagataaatgaagagcagcgg
gaaggtttgatggatgacttgagaggtgtcaacctaagcaaatttgtcagtgaagctgtt
actgctatttgtgatgccaagcttagatcgtcagacatacaagcagcagtccagatctgc
tctctgcttcatcaaaggtacaaagacttctccccaactctgcttcaaggtcttttgaaa
gtattttttccgggaaagtctggggatgacttagaagcagacaagaacttgagggccatg
aagaagcgaagcactttgaaactccttgtggaacttttctttgttggagttatagaagac
ggtggtgttttcttgaatatcattaaggatcttaccagtggagaacacttaaaggatcgg
gatactactcagacaaatttgactcttcttgctagttttgctcgtcagggaagaatgttt
cttggccttccactctctgggccggaaattcatgaagagttttttaagggccttagtatc
acgacagatcaaaagaaattcttcaggaaggcatttcaaacatattatgttgctgctgca
gaactgttgcaatccgagcatacttcacttcgccaaatggagcatgaaaatgctaaaatc
cttaatgctaaaggagagctcagtgatgaaagtgtctcgtcatacgagaagctgcggaaa
tcatatgaacatttgtaccgcaatgtctcatctttagcagaagcacttgatatgcagccc
ccagtaatgccagaggatggtcacacaacaagggttactagtggggaggatgcttcatcc
gctgctgctggaaaggattcttcggcacttgaagccatatgggatgatgaagatacaagg
gctttctacgaatgcttaccagatcttagagcatttgttccggcagtattattgggagaa
gcagagtctaaaagcagtgatcaatctgcaaagacccaggaacaatcaactgaacccgca
cttgaatcagaccaaagtcaacaaactacagaagatactggagaggcttctgcagatgtt
ggtgctttacaagagggcaaaaccatagagaaaggaaaggacaaggaagaaaaagaaaaa
gacaagatcaaagatccagacaaagagaaaggtgatagaaaaggagagcatgagaaagag
aagctcaaaagtattgaagggacaaatttggatgctttactgcagaggcttcctggttgc
gtgagccgtgatcttattgatcagttgactgtagagttttgttatttaaattcaaaagca
aatcggaaaaagcttgtgagggcagtatttaatgtccctagaacctcattggagctacta
gcttactattcgcgtttggttgccacactctcaacttgtatgaaggacgtctcatccatg
ctcctagcaatgttggaagaagagttcaacttcttaattaataaaaaggatcaaatgaac
attgaaacaaagattaggaacattagatttattggagaactctgcaagtttaagattgca
ccagctggtcttgtctttagttgtttgaaggcttgtttggatgatttcagtcatcataac
attgatgttgcttgcaatcttcttgagacttgtgggcgctttctgtatcgatctcctgaa
actactgtgcggatggcaaacatgttggaaatattaatgcgcttgaagaatgtaaaaaat
ttagaccctcggcacagcacccttgttgaaaatgcctactacctatgcaaaccacctgag
agatccgcacgggtcactaaagtccgtcctccattgcatcagtatataagaaagttgctc
ttctcagatcttgacaagtctaccatagagcatgtgctcaggcaactgcgtaaactacca
tggggtgaatgtgagccgtatcttttaaaatgctttctgaaggttcacaaggggaagtat
ggtcagatccacttgattgcttctctcaccgctggtttgagccgctatcatgatgaattt
gctgtatctgttgttgacgaggttctagaggagatacggcttggcctagaattaaatgag
tatgggatgcagcaaagacggattgcccatatgcgattcttaggagagctatacaactat
gagcatgtagattcttctgttatttttgagactctgtatttgactcttgcctttggccac
ggcacaccagagcaagatgtactagatccaccagaagattgtttccgcatgaggatggtc
attactcttcttgaaacctgtggtcactactttgatcgaggctcttccaagaggaaactt
gatcgattcttgatgcactttcagagatatatactaagtaaaggtgtactaccgcttgat
gttgaatttgacttacaggacttgtttgccgatctacgccccaacatgactcgatactct
tccattgaagaagttaatgcagctcttgtagaacttgaggagcgcgatcatactgtctcc
attgacaagaacaataatgagaagcactccgacactgaaaaaccttcaaggaggaacacc
tccaacaaaatgtcagtgaatggaaagagtgttgtgaatggaaccgaggaaaatggtgtt
gatcatggagaccttggagatagtgacagtgattcgggaggtggcaccattaatcgagat
agacatgatgaagaaggattgggtgaagagaatcatgatggtggatctgacagtaatgag
gatgatgatgatgatggtggtggaggaccggtatccgatgaggacgatgaagtccatgtc
agacagaaggttgcagaagtggaccctcaagaagcagaaaagtttgagctggatctcaaa
gctgttatgcaggaaagcatggagcaacgtaggctagagctgagaagccgaccaacatta
aacatgacaataccgatgaatgtgtttgaggggtccaccaaggaccatcatggaagagtg
gttggaggggaaagtggagatgaggcgttggatgaagagtctggaggaagcaaggaggtc
caggtgaaagttcttgtcaagcgtggtaacaagcaacaaacgaagcagatgtacatccct
cgggattgctcacttatccagagtacgaaacagaaagaagcagcagagcttgaagagaaa
caagacatcaagaggttggttttggaatacaatgacagagaagaagaggagcttaatgga
ttggggaaccaaactctgaactatatgcagagtggtggcaatagacttgcaggccgtggc
agcacttgggaaggaactagcggtagaggtggtggagcacgtcatagatatcacagtagt
tattccggcgggggagtttactacagcaggaaaaagtaa

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