Malus domestica (apple): 103433644
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Entry
103433644 CDS
T03194
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
mdm
Malus domestica (apple)
Pathway
mdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103433644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mdm03041
]
103433644
Spliceosome [BR:
mdm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
103433644
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
103433644
NCBI-ProteinID:
XP_008370136
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All DBs
Position
01:complement(join(23115187..23116063,23116508..23116668,23116763..23116954,23117048..23117467,23117595..23117876,23118586..23119260))
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AA seq
868 aa
AA seq
DB search
MEKGKSSKRDRRDRDRDYDKHRSRDADEKRSSKDTDYHRHHHRSDRDSKREPRDHKSRRE
RSREPSEDGRDVSRDHRERSYEPRAEREGSRERSRHREAKRERSEEREESKRKRKERERS
EGRDGDRDGLEDKKRSRVSEGERRERKRFEEDGQEVNGDQRKSRRFDDPRVKEEDGENGG
AVGRRTELNVNASEVNVKKVEVGEDQIGNFQSVAAPPNGSGWVGNGAALEPAMTSRTMPE
TSFAPNHPLPTKVSSIPTTNENKGVSITRSHEVHGNSSTDGTSSTAGKSANLSLGDVEKI
KRTLQKQKELTEKLKKLNQLKKGGNASKDASHNLETKEALKPPSTTGGILHAPAPSTAGG
TAASVATFDSSALPISAAAIPNFEAVKRAQELAAQMGFRHDPEFSPLINVFPGQVATDVA
APQKPTKAPVLRLDALGREIDEHGNLVNVTKPNNLSTLKVNINKQKKEAFQILKPELDVD
PEKNPHFDPDVGISKKFLRPKRMGFAFVEEGKWTKDAELIKLKSKFGEAQAKEQRAKQQQ
FAKARAAPDINPNLIEVGERVITKEKPKDPIPEIEWWDVPLLHSGTYNEVIDGTVAEEKL
KMEKITIYIEHPQPIEPPTEPAPPPPQPLKLTKKEQKKLRTQKRLAREKDRQEMIRQGLL
EPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHADRNIARKLTPAERREKK
ERKLFDDPNNVETIVSVYRINELSHPKARFKIDVNARENRLTGSCVISDGINVAVVEGGS
KSIKRYAKVMLRRINWAEAVKEEEEDDDVEDDKPPNKCVLVWQGSVARPSFNRFYVHECM
TEAAARKIFADAGVAHYWDLAVNFQDDN
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaggcaaatcgagcaaacgcgaccgcagggatcgagacagagactacgataag
catcgcagccgtgacgccgatgaaaagcgatcgtcaaaggacaccgattaccaccgccac
caccatcgatcggaccgcgattccaagcgcgagccccgcgaccacaaatctcgtcgggaa
cggtcacgcgagcccagtgaagacggcagggatgtctcgcgggaccaccgcgagcggtcc
tacgagcccagggccgagagggaagggagcagagagaggtccaggcatcgggaagcgaaa
cgcgagaggtcggaggagcgagaggaatcgaagcgtaagaggaaagagagggagaggagt
gagggtagagatggcgatcgtgatggtttagaagataagaagaggtccagggtttcggag
ggggagaggagagagaggaagcgattcgaggaagatggtcaggaagtgaatggagatcag
agaaagagtaggaggtttgatgacccccgagtcaaggaagaggatggagagaatggtgga
gctgttggacggagaactgaattgaatgtgaatgcgagtgaggttaatgttaagaaagta
gaagttggggaggatcagattggcaatttccagagcgtcgccgcccccccaaatgggagt
ggttgggtgggtaatggtgctgctctggaacctgctatgacatcaaggactatgcctgag
acctcttttgctcccaatcatccccttcctaccaaggtatcttcaattcctacaacaaat
gaaaataagggagttagtattaccagatctcatgaggttcatggaaactctagtacagat
ggaacatcttcaactgctgggaaaagtgcgaatctgtctcttggtgatgtagaaaaaatt
aagagaactttacaaaagcagaaggaattgactgagaagctgaagaagcttaaccagttg
aagaagggcggcaatgcaagcaaagatgctagccataacttggaaacgaaggaggcactg
aaaccaccatctaccactggtgggatactacatgcaccggctccatcaacagctggtggt
acagctgcttctgtggcaacatttgattcatctgcactacccatttctgcagcagccatt
cccaattttgaagctgtaaaacgtgcacaagagcttgctgctcagatggggttccgtcat
gaccccgagttttctcctcttataaacgtgtttcccggacaggtggcaactgatgttgct
gcccctcagaagcctactaaggcccctgttcttcgtcttgatgcccttggaagggaaata
gatgagcacggaaatttagtgaatgtgaccaaaccaaacaacctcagcactcttaaggtc
aacattaacaaacagaagaaagaagcattccagattctaaaacctgaattggatgtggat
cctgaaaagaatcctcattttgatccggatgtgggcatcagtaaaaaatttttgaggcca
aagaggatgggttttgcatttgtagaggaaggaaaatggacaaaagatgctgagcttata
aaattaaagagtaaatttggagaagcacaagccaaagagcaaagagcaaagcagcaacag
tttgcaaaggcaagggcagcgccagatattaatccaaatttgatagaggtaggagagaga
gttatcaccaaagaaaagccaaaggatccaattcctgaaatcgagtggtgggatgtgccc
ctcttgcactctggtacttataatgaagtcatcgatggtacagtagctgaagaaaaatta
aagatggaaaaaatcacaatctatattgagcatcctcaacctattgagccccctactgag
ccagctcctccaccgcctcaacctctgaagttgaccaagaaggaacagaaaaaactacgt
acacagaaacgtctggccagagagaaagataggcaggagatgattagacaaggcctactt
gagcctccaaagccaaaagttaaaatgagtaatttgatgaaagttcttggctctgaagca
acccaagatccaaccaggcttgaaaaggagatccggagtgcagctgctgaacgtgaacaa
gctcatgcagacaggaatatagcacgcaagctcactcctgccgaacgacgcgagaagaaa
gaaaggaagctttttgatgacccaaataacgtggagaccatagtctcagtttacaggatc
aatgagctgtcgcatccaaaggcccgcttcaagatagatgttaatgcgcgagagaaccgg
ctgactggatcttgtgtgatatcagatggtattaatgttgcggttgttgaaggtggaagc
aagtctattaagaggtatgctaaggttatgcttaggcgcataaactgggctgaagcagta
aaagaagaggaagaagatgatgatgttgaagatgacaagcctcctaacaagtgcgtgtta
gtatggcaaggaagtgttgccagaccgagcttcaatagattttatgttcatgaatgcatg
accgaagctgctgcccggaagatttttgctgatgctggcgttgctcattactgggatctt
gcggtcaacttccaagatgataattag
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