Malus domestica (apple): 103434603
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Entry
103434603 CDS
T03194
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mdm
Malus domestica (apple)
Pathway
mdm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103434603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdm03021
]
103434603
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103434603
Transcription machinery [BR:
mdm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103434603
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103434603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
103434603
NCBI-ProteinID:
XP_028959131
LinkDB
All DBs
Position
05:complement(join(45076994..45077038,45077345..45077893,45077979..45078887,45079610..45080326,45080959..45081213,45081331..45081432,45082115..45082474))
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AA seq
978 aa
AA seq
DB search
MDSERLTLSRENPRIAFSPHASADGKAMPGTELAQKPQPPTPIVDRFRALLKQREEDLRV
SPDDEVSPPSTEEIVHLYEMVLSELIFNSKPIITDLTIIAGEQRDHGKGIADAICARILE
VPVEHKLPSLYLLDSIVKNIGREYAKFFSSRLPEVFCEAYRQVHPNQHPAMRHLFGTWSA
VFPPSVLCRIEEQLQFSPQVNHQSSGLAPLRTSESPRPTHGIHVNPKYLRQLDSSTVDGV
GPQRLNSTGSVSHSPFAMGSNQLHPSSTARLARSSSPSNIGLDRSLPSAVDEYAAEQSPK
RFVERASPSHSVFDYRLGGAMGKDEESNEWRRNHYLDGSQKRFETSAAYNGVEHQNPRAL
IDAYGKDSADRSLNNKPLLVGRLGLNGIDRKATPMSWQNTEEEEFDWEDMAPNLADHGRG
NDFLASTVSPSRSYRASRGTQNASSLEPDVRSTWSSQAHPPSAKRSSIIAEDPVPPLGFG
HGSSGAVSRFQSETNHNLSSRYPQDAWNMPLHLSQPLQNPLNAKGRGGNIQTPFVTGGIY
SGGEKMSAFSDKPRDIDTQLHGPIASRMGSSSVDSVTADSRSGMPVSMGLRPPVNVHNSH
PPPVHSVFAMQNQRNLYGSINYSNTVKNQSPYNPLYMPEQQLDGYENKESRSTKSTQMPQ
YRPLQPQYRLRQEARENIFPPAETQVAPYLVVPPLNHGYTLRGPVPRQHLGIPTPYNPNG
TSQFPLPPLPPGPPPPSQGILSVQNPGSVVSSNQPGNAYSGLISSLMAQGLISLTNQSPV
QDSVGVEFNADLLKVRHESVISALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSK
NRKQKPSRKWFVNTSMWLTGAEALGTEAVPGFLPAETIVEKKSDEEMAVPADEDQNSCAL
CGETFDEFYSDETEEWMYKDAVYLNAPDGATGGMDRSQLGPIVHAKCRSESSVVSLEGFG
QDQGGIIEEGSQRKRLRS
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggactcggaaaggctcacactttcccgagagaatcctagaatcgctttttctccgcac
gcctccgccgacggaaaggccatgcccggtactgagttagctcagaagccccaacctccg
actccgatagtcgaccgattcagggctctgctcaagcagcgggaggaggacctgagggtt
tcgcccgacgacgaggtgtcgccgcccagcactgaggaaatcgtccacctttacgagatg
gtgttgtcggaacttatctttaattcgaagcccatcattaccgatctcaccatcatcgcc
ggcgagcagagagaccatggaaagggcattgccgacgccatctgcgcccggattctcgag
gtcccggtcgagcataaactgccttcactttatcttttagacagtattgtcaagaatatt
ggccgagaatatgcaaagtttttctcttcccgtcttcctgaggtcttttgcgaggcatac
aggcaagtacaccctaatcagcatcctgccatgcggcacctctttggcacttggtcagca
gtgtttccaccttcagtcctttgcaggattgaagagcaactgcaattttctccgcaagta
aaccaccaatcatcaggattagcacctttgaggacttctgaatctcctcgaccaactcat
ggcatccatgtcaatccaaaatatttacgtcagttggacagctcaactgtggatggtgtt
ggaccccaaagattaaactcaacaggaagtgtgagtcattcgccttttgccatggggtcc
aatcagttgcacccatcttcaactgctaggcttgcaagatcatcttcgccttcaaatatt
gggcttgataggtctttgccatcagcagttgatgaatatgcagcagaacagtctccaaaa
aggtttgttgagagggcttctccatctcattctgtgtttgattatagacttggtggagca
atgggtaaagatgaggagtcgaatgaatggcgaagaaatcactatcttgatggcagtcag
aagcggtttgagacttctgctgcatataatggagttgagcatcagaacccaagagcttta
attgacgcatatgggaaagacagtgcggatagaagtttaaacaataagcctctgctagtt
gggcggctgggcctgaacggtatagatcgtaaggcaactccaatgtcatggcagaatact
gaagaggaagagtttgattgggaagatatggccccaaatttagcagaccatggtaggggt
aacgatttcttggcctcaactgtatcgccttctagaagctacagggcaagccgtggaaca
caaaatgcaagctccttggagccagatgttaggagtacttggtctagtcaggcacatcca
ccatcagccaaacggtcctctattatagctgaagatccagttcccccacttggttttggt
catggatcatcgggtgctgtgtctcgatttcagtctgagacaaatcataatctgagttct
cgctaccctcaagacgcctggaatatgcctttgcatctctcgcagcctttgcagaatccc
cttaatgccaaaggaagaggagggaatattcagacaccctttgtgacaggcggtatatat
tcaggtggtgagaaaatgtccgcctttagtgacaagcctcgagatattgatacacaactt
catgggcccattgcatcaagaatgggttcctctagtgttgactccgttactgctgactcg
agatctgggatgccagtgtcaatgggtttaaggcctccagtaaacgtgcataattctcac
cctccccctgtgcactcagtttttgcaatgcaaaaccagaggaatctttatggttcaata
aattatagcaatactgtaaaaaatcaaagcccatataatcctttatacatgccggagcag
cagttagatggctatgaaaacaaggagtcgaggtcaacaaagtcaactcagatgccacaa
tatcgtcccttacaaccacagtatcgtctacgtcaggaggcacgggagaatatttttcca
cctgcagaaactcaggtggcaccttatttagtggtaccacccttaaatcacggatacact
ttgcgaggtcccgtacctcgtcaacatttgggcataccgaccccctataacccaaatggc
acttcgcagttccccttgccacctctaccaccgggcccccctcctccctcgcaaggcata
ctttctgtccaaaaccctggttcagttgtctctagcaaccagcccgggaatgcatattct
ggtttgattagttctctcatggctcaaggtttgatctcattgacaaatcaaagccctgtc
caggattctgtaggagtcgagtttaatgctgaccttctcaaggtgcgtcatgaatctgta
ataagtgccctatatggtgatctccctagacaatgcacaacctgtggccttaggttcaag
tgccaagaagagcacagtagtcatatggattggcatgtgacaaagaatcgtatgtctaaa
aaccgcaagcagaagccctctcgcaaatggtttgtaaatacaagcatgtggctcactggt
gcagaggcattgggtaccgaggcagtccctggatttttgcctgctgagaccatagtggaa
aagaagagtgatgaagaaatggctgttcctgccgatgaggatcagaattcgtgtgcatta
tgtggagagacttttgatgaattttatagtgacgagacagaggaatggatgtataaagat
gctgtgtacttgaatgcacctgacggagcaacaggaggcatggataggtcacagttaggt
cctattgtgcatgctaaatgcagatccgagtcaagtgtggtctcccttgaaggttttgga
caagatcaagggggaattattgaagagggtagtcaaagaaaacgattgcggagttaa
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