Malus domestica (apple): 103434725
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Entry
103434725 CDS
T03194
Name
(RefSeq) uncharacterized protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mdm
Malus domestica (apple)
Pathway
mdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103434725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103434725
03041 Spliceosome [BR:
mdm03041
]
103434725
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
103434725
Spliceosome [BR:
mdm03041
]
Complex B
Other components
Prp19-related factors
103434725
Complex C
103434725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_19
NRDE-2
HAT
Motif
Other DBs
NCBI-GeneID:
103434725
NCBI-ProteinID:
XP_008371300
UniProt:
A0A498JVZ9
LinkDB
All DBs
Position
05:complement(join(43996023..43996472,43996623..43997075,43997752..43997922,43998000..43998184,43998853..44000356))
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AA seq
920 aa
AA seq
DB search
MAISQELYPSQDDLLYEEELLRNPFSLKLWWRYLIARAESPFKKRFIIYERALKALPGSY
KLWYAYLRERLELVRNLPITHSQYETLVNTFERALVTMHKMPRIWIMYLQTLTEQKLVTK
TRRTFDRALCALPVTQHDRIWEPYLVFVSQKGIPIETSLRVYRRYLKYDPTHIEDFIEFL
INSSLWQEAAERLAAVLNDDKFYSIKGKTKHRLWLELCDLLTKHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRNLHEKARDIFEEGMTTVVTVRDFSVIFDSYAHFEEIVL
AHKMETADLSDDEEDKENGVAEDGNEEEEDLRLDINLSVAELEKKMLDGFWLHDDKDIDL
RLARLDHLMDRRPVLANSVLLRQNPHNVEQWHRRVKLYEGNPTKQILTYTEAVRTIDPMK
AVGKPHTLWVAFAKLYENHNDIVNARVIFDKAVQVNYKTVDNLASLWCEWAEMELRHKNF
KGALELMRRATAEPSVEVKRRVAADGNAPVQMKLHKCLRIWAFYVDLEESLGKLESTRAV
YERILDLKIATPQIIINYASLLEEHKYFEDAFKVYQKGTKIFKYPHVKDIWVTYLSRFVK
RYGKKELERARELFEEAVQAAPADAKKPLYLQYAKLEEDYGLSKRAMKVYDEATKAVPNH
EKLGMYEIYIARATEIFGVPKTRDIYQQAIDSGLPDKDVKTMCLKFAELEKSLGEIDRAR
GVYTFASQFSDPRSDVDFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYM
MQKDQRLNMDEAKDKLKQAGVPEDEMAALERQLAPVANDTTTKDSSRIGFVSAGAIQQTD
GGIKVTANPEDIELPEENDSEDDERVEIQIAQKEVPDAVFGELANKRKEAEKDEGGDADT
KDDGSRLGALERIKRLKRGA
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggcgatctctcaggagctatacccatcgcaagacgacctgctctacgaagaggagctt
ctccgcaacccattcagcctcaagctatggtggcgctacctaatcgctcgagccgaatct
ccgttcaagaagcgcttcataatctacgagcgagccctcaaggctctgcccggaagctac
aagctctggtacgcttacctccgcgaaagactcgagcttgtaaggaacttgcccatcact
cactcgcagtatgaaacactagtcaacacgtttgaacgagccctagtgacgatgcacaag
atgcccaggatttggattatgtacttgcagactttgacggagcagaaattggtcaccaag
actcgccggacctttgacagagcgctgtgtgctcttcccgtgacgcagcacgatcgcatt
tgggagccctacctcgtgttcgtgagccaaaagggcatcccaatcgagacctcgcttcgg
gtttatcgcaggtatttgaaatatgaccctacccatattgaagatttcatcgagttcttg
attaattctagtctttggcaagaggctgccgagaggctggctgctgtattgaatgatgat
aagttttactcgataaaggggaagacgaaacataggctgtggctagaattgtgtgatttg
cttactaagcatgccaccgaggtttcgggcctcaatgtggatgctataattagaggtggg
attaggaagtttacagatgaggtggggcggttgtggacctctcttgcggactattacatt
agaaggaatttgcatgagaaggcgagggatatattcgaggagggtatgacaactgtggta
acggtgagagattttagtgtgatttttgattcgtatgctcattttgaagagattgtgctt
gcccataagatggaaactgctgatttgagtgatgatgaggaggacaaagagaatggggtt
gcggaggatggaaatgaggaggaagaagatcttcgattggatattaacttgtctgtggct
gagcttgagaagaaaatgcttgatgggttttggttacatgatgataaggatatagatttg
agattagctcgattggaccatctcatggatagaagacctgtactagcaaatagtgttctt
ttacgacaaaatcctcataatgtagagcagtggcaccgaagagtgaagctttatgagggc
aatccaaccaagcagatacttacttacactgaggcagtgaggacaattgatccaatgaaa
gcggttgggaagcctcacactttgtgggttgcttttgctaagttgtatgagaaccacaac
gatattgtcaatgccagagtgatttttgataaagcagtgcaggtgaattacaagaccgtg
gataatttggctagtctgtggtgtgagtgggcagaaatggaattgaggcataagaatttc
aaaggagcactggaactgatgaggcgggctactgcagagccatctgttgaggtgaaacga
agagtggctgctgatgggaatgcaccggttcagatgaagctgcataaatgcttgaggatt
tgggccttttatgtggacttggaggagagcctgggtaaattagagtccactcgagctgtt
tacgagaggatattggatttgaaaatagccacaccgcagatcataatcaattatgcatca
cttcttgaggagcataaatactttgaagatgcgttcaaggtgtatcaaaaaggtactaaa
atattcaagtatccacatgtcaaagacatatgggttacatatctctctagatttgtaaag
agatatgggaagaaagaacttgagcgcgcaagagagctatttgaggaggctgttcaagcg
gcccctgctgatgcgaagaagcctttgtatcttcaatatgcaaagctggaggaggattat
ggcctatcaaagcgggcgatgaaagtctatgatgaagcaacgaaggctgttccaaaccat
gagaaactgggcatgtatgaaatctatattgcccgtgccacagagatatttggcgtccca
aaaacaagggatatataccagcaggccatagattctggtcttccagacaaagatgtgaag
acaatgtgtttaaagtttgctgagcttgagaagagcttgggagaaattgatcgtgctcgg
ggagtgtatacatttgcgtcacagttttcggatccacgatctgatgtggatttctggaac
aaatggcatgagtttgaagtgcagcacggaaatgaagataccttccgggagatgcttcga
attaaacgaagtgtttccgcaagctatagccagacgcactttattctacccgagtatatg
atgcaaaaggatcagaggctgaacatggacgaggcaaaagacaagttgaaacaggcagga
gtccccgaagatgaaatggctgctctagagaggcagttggcacctgtggccaacgatact
accactaaagatagcagtagaataggctttgtgagtgctggagcaattcaacagaccgac
ggagggatcaaagttaccgcaaatcctgaagacattgagctaccggaagaaaatgattca
gaagacgacgaaagggtggagattcaaattgcacagaaggaggtcccggatgctgttttt
ggagagttggctaacaagagaaaggaggccgaaaaagacgagggcggagatgctgatacc
aaggacgatggcagccgccttggtgcccttgagagaataaaaaggctaaaacgaggcgcc
tga
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integrated database retrieval system
