KEGG T03194: 103435036

Malus domestica (apple): 103435036

Entry

103435036         CDS       T03194

Name

(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X2

K10683

BRCA1-associated RING domain protein 1

Organism

mdm Malus domestica (apple)

Pathway

mdm03440

Homologous recombination

Brite

KEGG Orthology (KO) [BR:mdm00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    103435036
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103435036
   04121 Ubiquitin system [BR:mdm04121]
    103435036
   03036 Chromosome and associated proteins [BR:mdm03036]
    103435036
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103435036
Messenger RNA biogenesis [BR:mdm03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     103435036
Ubiquitin system [BR:mdm04121]
Ubiquitin ligases (E3)
  Multi subunit type E3
   BRCC complex
    103435036
Chromosome and associated proteins [BR:mdm03036]
Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     103435036
DNA repair and recombination proteins [BR:mdm03400]
Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-core complex
     103435036

SSDB

Motif

Pfam:

BRCT BRCT_2 zf-HC5HC2H zf-C3HC4_2 zf-C3HC4 zf-HC5HC2H_2 zf-RING_2 zf-C3HC4_3 zf-RING_6 zf-C3HC4_4 zf-RING_UBOX RTT107_BRCT_5 zf-RING_10 zf-RING_5 PTCB-BRCT

Other DBs

NCBI-GeneID:

103435036

NCBI-ProteinID:

XP_008371656

LinkDB

Position

10:complement(join(36889785..36890141,36890276..36890394,36890581..36890746,36890862..36890988,36891116..36891210,36891295..36891481,36891633..36891733,36891860..36892903,36893008..36893118,36893257..36893708,36894212..36894325,36894423..36894493,36894604..36894657,36894968..36895026))

AA seq 1018 aa
METPPAHLEKIGRELKCPICLSLLSSAVSLNCNHLFCNCCIVKSMKSGSNCPVCKVPYRR
REVRPAPHMDNLVSIYKSMEDDLGINIFVTQNAPPTKSSDGKHHAEDDFSHGFQDRAQKQ
KTLRGKRSRKTKANLESSGSISIKPSFPNKKRVQVPQSPLSETPTRHEKLEGDLMADRVK
QSSKTLKEKPVLNEKGELVLSPFFWLNDKDVENLSQHSSGDQLSDLPSPNVPTFSDIKDS
DDENSVRSLPGEVHSTSSNAADLFDSEMFEWTQRACSPELFPSPEMQVADDEHDRVQEKE
SKEVSQNKKSDELSVKSARSKRNKKSNGNMDFLPDLPTAGTKDVSHEVVSNESDKRVRKT
RNLMKRKCATSHTDPGTNISVTSKGSEVFYEEQACENNGGSLAKTCKRSKKGHSSVVTKP
TSENVHVLSTRADSRINGDENRVTESPTSIGKNAGSDELSSKKAGNIYKEVNDKNKIDRP
VRSKKQKMVSMKKTMLEDVSEIQKQANKDTPTELSPTNLPTDDNQKASESRNKSRKLARK
AKSGDRELKSKKKLKASSDGNSKDDTSVEIGEGHGNVNENGNETAEKSKDNHNVITDQSP
VQKLLSFTNNVVLKRCEAVPSNIQCAFCLSSEESEASGEIVHYCNGKPVAADHDGRLKVI
HVHRTCAEWAPNVYFEDDIAINLEAELTRSRKIKCSCCAIKGAALGCCEKSCRRSFHVTC
AKLMPQCRWDTDNFVMLCPIHASSNLPNESPGSQARRKKNPRKQPNVERPKVAAKQDSNI
PPDQKFCGSSKKLILCCSSLTNAERESVSGFERLSGLTVLKNWDSSVTHIIASTDENGAC
RRTLKVLMGILEGKWILSVEWINACTEAMKLVDEEPYEINVDIYGIRDGPRLGRLRLQNK
QPKLFEGFKFYFMGDFIPSYKGYLQDLVIAAGGTILQRKPVPEGPKALSAGSPKCQTFII
YSLELPDQCHCSKKSTIFNTRQADAKALATSTGAKVASNSWVLNSIAACKLQNLSDSK

NT seq 3057 nt +upstreamnt +downstreamnt
atggagactcctccggcccacctcgagaagatcggcagagaactcaagtgccccatttgt
ttgagtctgctgagttctgcggtttcactcaattgcaatcatctcttctgcaactgttgc
attgtgaagtcgatgaaatcgggttccaattgtcctgtttgtaaagtcccatatcggcgt
agagaggttcgcccggctcctcacatggataatttggttagtatttacaagagcatggaa
gatgatttgggaattaatatatttgtcactcagaatgcacccccaactaaatcatcagac
ggaaaacatcatgctgaagatgattttagccacggctttcaggatagagcgcagaaacag
aaaaccttaagaggaaaaagatccaggaaaactaaggccaacctggaaagttctggttct
atttcaattaaaccttcatttccaaacaagaaaagggtccaggttccacagtctcctctt
tcagaaaccccaacccgccatgaaaagttagaaggtgatttaatggctgatcgagtgaag
cagagttcaaaaacactaaaggagaagcctgttctaaatgagaagggagaactggttctg
tcacctttcttttggttgaatgacaaagatgtagaaaatttgagtcagcattcttccggt
gatcaacttagcgatcttccatctccaaatgttcccacattcagtgatatcaaagactct
gatgatgaaaattctgttaggtccctaccgggagaagtgcacagcacatcttctaatgct
gcagatctatttgatagtgagatgtttgaatggacacaaagagcttgctctcctgaactc
ttcccaagtcctgagatgcaggttgcagacgatgaacacgatagagttcaagagaaggaa
tcaaaagaagtctcacaaaacaagaaatcagatgaactttctgtaaaaagtgcaaggtct
aaaagaaacaaaaaaagtaatggaaatatggattttctgccagatcttcccactgctgga
actaaagatgttagtcatgaagttgttagtaatgaatctgacaagcgagttaggaagaca
aggaatctcatgaaaagaaaatgtgctacaagccatacagatccaggaacaaatattagt
gtcacttcaaagggatctgaggtattttatgaagaacaagcatgtgagaataacggtggt
tctttagctaagacttgcaaaaggagtaagaagggacattcatctgttgtaaccaagccc
acatctgaaaatgttcatgtcctctctaccagagctgatagtcgaattaatggtgatgaa
aatagggtaactgaatcacctacttcaataggaaaaaatgctggcagtgatgaactgtcc
agtaagaaggctggaaatatctataaggaggtcaatgacaagaacaagattgaccgccca
gtaaggtcaaaaaaacaaaagatggtctccatgaaaaagacaatgcttgaggatgtatca
gaaatacagaagcaagcaaataaggatactcctactgagttgtctcctacaaatcttccc
acagatgataaccagaaagcctctgaatccaggaataaatccagaaaacttgctagaaaa
gccaagtcaggtgatcgagaactgaaaagtaagaaaaagctgaaagcttcttctgatggc
aactcaaaggatgatacttctgttgagattggagaaggtcatgggaatgttaacgaaaat
ggaaatgaaaccgctgagaagagcaaggacaatcataatgttataactgatcaatcacca
gtgcagaagcttctttcatttacaaacaatgtggttttgaagagatgtgaagctgttcct
agtaatatccagtgtgctttctgtctttcatcagaagaatcagaggcttctggagagata
gtccactattgtaatggcaagcctgttgctgcggatcacgatggaagactcaaggttata
catgtacacaggacctgtgctgaatgggctcctaatgtctattttgaagatgatattgct
attaatcttgaagctgaattaactaggagtcgtaaaattaaatgttcttgctgcgcaatc
aaaggagctgctcttgggtgctgtgagaagagttgtcgtaggagctttcatgttacctgt
gcaaagctgatgcctcaatgtcgctgggatactgataactttgttatgttatgccccatt
catgcctcctccaatttgccaaatgaaagccctggatctcaagcaaggaggaagaagaat
cctagaaaacaacctaatgttgaacgtcctaaagttgctgctaaacaagacagcaatatc
cccccagatcagaagttttgtggatcgtccaagaaattgattctttgttgttcatctctc
acaaatgcagagagggaatctgtctctggatttgaaagattatctggacttacggttttg
aagaattgggattctagtgttacacatattattgcatcgacagatgaaaatggagcatgc
agaagaaccctcaaagttttgatgggtatcttggaggggaagtggattctgagtgtggag
tggattaatgcttgcacagaagcaatgaaactagttgatgaggagccttatgaaatcaac
gttgacatttatggaatcagggatggtcctcgacttggtagactaaggctgcagaacaag
caaccaaaactttttgaggggttcaagttttacttcatgggagacttcataccttcatac
aaggggtatttacaagaccttgtaatagctgctggaggaacgattttgcaaagaaaacct
gttccagagggcccgaaagccttgtcagccggttcccccaaatgtcaaaccttcataatt
tacagcctcgagctacctgaccaatgtcattgcagcaagaagagtacaattttcaacact
aggcaggctgatgcgaaggctttggccacctccactggagccaaggtagcaagcaactca
tgggtattgaactccattgctgcctgcaagttacaaaatctctctgattccaaatag

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