KEGG   Malus domestica (apple): 103435600
Entry
103435600         CDS       T03194                                 
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
mdm  Malus domestica (apple)
Pathway
mdm03420  Nucleotide excision repair
mdm04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    103435600
  09124 Replication and repair
   03420 Nucleotide excision repair
    103435600
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:mdm04121]
    103435600
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103435600
Ubiquitin system [BR:mdm04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     103435600
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      103435600
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      103435600
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd CPSF_A Beta-prop_RSE1_1st
Other DBs
NCBI-GeneID: 103435600
NCBI-ProteinID: XP_008372209
LinkDB
Position
05:complement(join(39841979..39842560,39842933..39843217,39843326..39843677,39844188..39844462,39844812..39845087,39845649..39845759,39846283..39846498,39846585..39846785,39847055..39847163,39847259..39847365,39847461..39847670,39848198..39848273,39848527..39848576,39848674..39848736,39848895..39848946,39849070..39849161,39849240..39849299,39849977..39850025,39850736..39850839))
AA seq 1089 aa
MSIWNYVVTAHKPTNVTHSCVGNFTAPQELNLITAKCTRIEIQLLTPLGLQPILDVPIYG
RIATLELFRPHGETQDFLFIATERYKFCVLQWDADASELITRAMGDVSDRIGRPTDNGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCSKPTIVVL
YQDNKDVRHVKTYEVSLKDKDFVEGPWAQNNVENGADLLIPVPPPLCGVLIIGEDNIVYR
SPNTFKAIPIRHSITKAYGKVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGET
SIASTISYLDNAFVYIGSSYGDSQLVKLNLHPDAKGSYVEVLERYVNLGPIVDFCVVDLE
RQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGIKGMWSLRSSTDDPYDTFLVVS
FISETRILAMNIEDELEETEIEGFCSQVQTLFCHDAVCNQLVQVTSSSVRLVSSTTRELK
HEWNAPAGYSINVATANATQVLLATGGKHLVYLEIGDGILTEKNHAQLDFEISCLDINPI
GDNPNYSQLAAVGMWTDISVQIYSLPDLNRITKEHLGGEIIPRSVLLCAFEGISYLLCAL
GDGHLLNFILNTSTGELTDRKKVSLGTQPITLRTFSSKSTTHVFAASDRPTVIYSSNKKL
LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICH
QEQSRTFAILSVKYNQSSAEDSETHFIRLLDDQSFDLITYYQLDAFEYACSILSCSFSDD
INVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLVAEKETKGSVYSLNAFNGKLLAAI
NQKIQLYKWTLRDDGTRELQSECGHHGHILALYVQTRGDFIIVGDLMKSISLLMYKHEEG
AIEERARDYNANWMSAVEILDDDVYIGAENFFNLFTVRKNSEGATDEERGRLEVVGEYHL
GEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPQEQYAFLEKLQSNLRRV
IKGVGGLSHEQWRSFSNEKKTVDAKNFLDGDLIESFLDLNRSKMDEISKQMRVSVEELCK
RVEEMTRLH
NT seq 3270 nt   +upstreamnt  +downstreamnt
atgagcatatggaactacgtcgtaacggctcacaagcccaccaacgtcacccattcctgc
gtcggcaatttcaccgccccgcaggagctcaatctcatcactgcgaaatgtacgcgaatt
gaaattcagttacttactcctctgggactgcagcctatcttggatgtcccgatatatgga
agaatagcaacgcttgaacttttccggcctcatggtgaaacacaggattttctattcatt
gcaacagaaagatacaaattttgtgttcttcagtgggatgctgacgcatctgagctcatc
actagggcaatgggggatgtctcagatcgcataggtcgtccaacagacaatggtcaaatt
ggtattattgatccagattgtagattaatcggactccatttgtatgatggattgtttaag
gtcattccttttgataataaagggcagctcaaggaagcatttaatatacggcttgaggaa
cttcaagttttggatatcaagtttctatatggttgttccaaaccaacaattgtagtccta
tatcaggataacaaagatgttcgccatgtcaaaacatatgaggtttctctgaaggataag
gattttgttgaaggtccttgggcacagaacaacgttgaaaatggggctgatttgttaata
ccagttcctccgccgctgtgcggtgttcttattatcggggaagataatattgtttaccgc
agcccgaatacatttaaagcaatcccaataagacattccatcacaaaagcctatgggaaa
gtagatgcagatggttccaggtatttacttggtgatcatgccgggttacttcacctactt
gttataacgcatgagaaagaaaaggtgactggactgaaaattgagctcttgggggagaca
tcaattgcatctaccatctcataccttgataatgcatttgtgtatatcggatcaagttat
ggggattcacagcttgtaaagctgaatctacatcctgatgcaaagggttcatatgtggaa
gtcttagaaaggtatgtcaatttggggccgatcgttgacttttgtgtggttgatcttgag
aggcaaggccaaggtcaggttgtaacttgttctggagctttcaaggatggttctcttcgt
gtagttcgaaatggaattggaatcaatgaacaggcatccgttgagcttcaaggtattaag
ggaatgtggtcgttaagatcctccactgatgatccttatgacaccttcctggttgtaagc
tttatcagtgagacaaggattttggcaatgaatattgaggatgagttggaagaaactgag
atagaaggcttctgttctcaagtacagactttattttgccatgatgctgtctgtaatcaa
ctggtgcaggtaacttcaagctctgtaagattagtcagttctacaactagggagctcaag
catgagtggaatgctccagcaggctattcgattaatgttgctactgctaatgccacccag
gttttattggcaactggtggaaagcacttggtttatttggaaattggtgatgggatattg
acagagaaaaaccacgcacagttagattttgagatatcatgccttgacataaaccctata
ggcgacaatcccaactatagccagctggcagctgttggaatgtggacagatattagtgtc
cagatatattcacttcctgacctgaaccgcatcacaaaggaacatttgggaggggagatc
atacctcgttctgttcttctttgtgcctttgaagggatatcctacctattgtgtgcccta
ggagatgggcacctcttaaactttatattgaacacaagcactggtgagttgacagacagg
aaaaaagtctctcttgggacgcagcccattacactccgtaccttctcatccaagagtact
acacatgtatttgctgcatcggataggccaactgtcatatatagtagcaacaagaaactg
ctttacagcaatgtaaatctgaaagaagtcagccatatgtgcccattcaactctgctgct
tttccagatagccttgcaattgctaaggaaggtgaacttaccatcggcacaattgatgac
atccagaagcttcatattcgctctattcccctaggtgagcatgcgcgtcgtatctgtcat
caggagcagtccaggactttcgccattttgagtgtgaaatataaccagtctagtgcagaa
gactcagaaacacacttcatccggttgttagatgaccagagttttgatctcataacatat
tatcaactggatgcttttgagtatgcctgctctatacttagctgttctttctcggatgac
attaatgtatattactgtgtcgggactgcatatgttctcccggaagaaaatgagccaacc
aagggccgcattctggttttcattgttgaagatgggaagctgcagctcgtcgctgagaag
gaaaccaaggggtctgtttactctttaaatgcattcaatggcaagttacttgctgctatt
aatcaaaagatacagttatacaagtggactctgcgggatgatggcactcgtgaattgcaa
tcagaatgtggacatcatggccacatacttgccctttatgtccagactcgtggagatttc
atcattgttggggatttaatgaagtcaatttctctgttaatgtacaagcatgaggaaggt
gccattgaggagcgagcccgtgattataatgcaaattggatgtctgctgtagagatactc
gacgatgatgtttacattggagctgaaaatttcttcaacctcttcactgttcgtaaaaat
agtgagggtgcaactgatgaggaacggggccgccttgaggttgtaggtgagtatcaccta
ggcgagtttgtcaataggttccggcacggctctcttgtcatgcggttgccagactctgat
gtgggccagattccaactgttatctttggcaccgtgaatggtgtgatcggagtaattgcc
tcacttcctcaagagcaatatgcatttttggagaagctccagtcaaacttgaggagggtg
ataaagggtgttggagggttgagccacgagcagtggaggtcattcagcaacgagaagaaa
actgtagacgccaaaaatttcttggatggcgatctgatagaatcgttccttgatctaaac
cgcagcaagatggatgagatctcaaaacaaatgcgcgtttcagtggaggagctctgcaag
agagtagaagaaatgacgaggctgcattga

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