Malus domestica (apple): 103435642
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Entry
103435642 CDS
T03194
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
mdm
Malus domestica (apple)
Pathway
mdm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103435642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdm03021
]
103435642
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103435642
Transcription machinery [BR:
mdm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103435642
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
103435642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
Torus
zf-CCCH
zf-CCCH_2
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
103435642
NCBI-ProteinID:
XP_008372260
LinkDB
All DBs
Position
05:join(39682147..39682553,39682940..39683314,39685056..39685218,39685327..39685437,39685838..39685906,39692863..39692949,39693284..39694087)
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AA seq
671 aa
AA seq
DB search
MEDSDGVLNFDFEGGLDAAATVSATAGPANTGPASNYSVMQSDSAVTGAGGAGSNQAAVA
QQPNQNANRMGGRSYRQTVCRHWLRSLCMKGEACGFLHQYDKSRMPVCRFFRLYGECREQ
DCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQHLNSYNYNNS
NKFYQQRNAGFPQQGEKYQPAQGPNNFVGKPTTAESGNVQQQQQLQQTQQQVGPAQTQNL
PSGLANQANRSALPLPQGTSRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSAE
NVILIFSVNRTRHFQGCAKMMSRIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHK
TRHLRNPYNENLPVKISRDCQELEQSVGEQLASLLYLEPDSELMAISIAAESKREEEKAK
GVNPENGGENPDIVPFEDNEEEEEEESEDEEDSFGQVPGAGNDGRGRGRGGVMWPPHMPL
PRGGRPMPGMQGFPPGMMGPDAMPYGPDGFVMPNPFGMGPRGFNPYGPRFSGDFTVPNPG
MMFRGRPQQPGFPPGGFGIMGPGRAPFMGGPHPGRGGRPTGISPMFPPPPPLLSQNPNWM
PKRDPRGASSDRRGQDMTGSAGGPDDEALYGAGNNSRNDDSDSEDEAPRRSRHGEGKKKR
RDSEGDATSEH
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaggactcggacggagtcctcaacttcgacttcgagggcggcctcgatgccgccgcc
accgtctcggccactgcgggccccgccaacacgggcccagcatctaattattccgtgatg
caatcagactccgccgtcaccggggccggcggggcgggctccaaccaggctgctgtggcg
cagcagcccaatcagaatgcgaaccggatgggtgggcggagctatcgccagacggtgtgt
cgtcactggctgcgcagcctttgtatgaagggcgaggcctgtgggttcctccaccaatac
gacaagtcgcgcatgcccgtgtgccgcttcttccggttgtatggtgagtgccgcgagcag
gactgcgtgtacaagcacactaacgaggacatcaaagagtgcaatatgtacaagttgggt
ttttgtccaaatggtcctgattgccggtatagacacgcaaagctgccgggacctccacct
ccagtggaagaagtccttcagaagatccagcatttgaattcttacaattacaacaactca
aataagttctatcaacaaaggaatgctggttttccccaacaaggagagaaataccaacct
gcacaaggacccaacaattttgtgggaaaacctactacagcagagtctgggaatgttcag
cagcagcaacagcttcaacaaacccaacaacaggttggccccgcacagacacaaaatctt
ccttctggcctagctaatcaggcaaatagaagtgcgttgcctttgcctcaaggaacatct
aggtattttattgttaaaagttgcaaccgtgaaaatttggaattatctgtacaacaagga
gtatgggcaacccaaaggagcaatgaatccaaacttaatgaagcttttgactctgctgaa
aatgtgattttaattttctcagtcaaccggactcgacatttccagggttgtgcaaagatg
atgtccagaattggtgggtcagttggtggagggaactggaaatatgcacacggaactgcg
cattacgggcgaaatttctctgtcaaatggttaaagctatgtgaactgtcctttcacaaa
actcgtcatttgaggaatccctacaatgagaacctaccagtgaagataagtagagattgt
caagagctagagcaatccgtcggtgagcagttggcttccttgctttatcttgagccagat
agtgaacttatggcaatttcaattgcggcagaatcaaaacgtgaagaagaaaaagcaaag
ggagtcaatccagagaatggtggtgagaatccagacattgtcccatttgaggacaatgaa
gaggaggaagaggaagaaagtgaagatgaggaagatagcttcggtcaggttcccggagca
ggaaatgatggcagaggaaggggcaggggaggagtcatgtggccacctcacatgcctcta
ccaagaggtggcagacctatgcccgggatgcaaggttttcccccaggaatgatgggtcct
gatgcaatgccttatggccctgacggatttgttatgccaaatccttttggtatgggccct
cggggtttcaatccgtatggtcccaggttttcaggtgactttacagtgcccaaccctggc
atgatgttccgtggacggccacaacaacctgggtttccacctggtgggtttgggattatg
ggtcctggacgagcaccatttatgggaggcccccatccaggccgaggtggtcggccaact
ggtatatctccaatgtttccaccacccccgccactattatctcaaaaccctaactggatg
ccgaagagagatccaaggggagcttccagtgatcggagaggacaagatatgacaggttcg
gctgggggaccagatgatgaggcactttatggtgctggaaacaactctagaaatgatgac
agtgacagtgaggatgaggccccgaggcggtcgaggcatggagagggaaagaagaaacgg
cgagactcggaaggagatgcgacctccgagcactag
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