Malus domestica (apple): 103436367
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Entry
103436367 CDS
T03194
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
mdm
Malus domestica (apple)
Pathway
mdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103436367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mdm03041
]
103436367
Spliceosome [BR:
mdm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
103436367
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_EIPR1
PRP4
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_SCAP
WD40_RFWD3
WD40_like
Beta-prop_IFT140_1st
Beta-prop_Nup120_160
Beta-prop_NUP159_NUP214
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
103436367
NCBI-ProteinID:
XP_008373008
LinkDB
All DBs
Position
12:join(10082622..10083382,10083716..10084169,10084264..10084461,10084577..10084658,10087506..10087639)
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AA seq
542 aa
AA seq
DB search
MEEEKPLSTLPEPSVAAVPIAPVRAPPLRPPPPVNGEARTSTSDSDDSDSEEPPRATGVS
GGEYEISEESRVVRERQEKAMQELLMKRRASALAVPTNDMAVRARLRRLGEPITLFGERE
MERRDRLRMIMARLDSQGELEKLLKVHEEEEAAASTAAVEDGDDQIIQYPFYTEGSKALL
NARIDIAKYSIRRAALRLERARRKKDDPDEDMDAELDLVLEQAKSLELDCSEIGDDRPLS
GCSFSHDGQLLATCAISGVAKLWSMPEAKKVTTLKGHTERLTDVQFSPVHNLLATASADR
TARLWNTEGTQLLTFKGHLDRLARIAFHPSGKYLGTTSFDQTWRLWDVETGEELLLQEGH
SRSVYGIDFHPDGSLVASSGLDALTRVWDLRTGRSILALEGHVKKVLALSFSANGYYLAT
GGEDNTCRIWDLRKKKSIYTIPAHSNLISQVKFEPQEGYFLVTASYDLTAKIWSARDFKP
VKTLSGHEAKVTSLDISGDGQQIATVSHDRTIKLWSSRSNKKDQAMDVDYSTNEKDQAMD
AD
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggagaaacctctatcaactttaccggagccatctgttgcagcagtcccaatt
gctccagtccgcgctcctcccctcagaccgccgccgccagtaaatggggaagccaggacg
agcacaagtgactccgatgattccgactcggaggagcctccacgagctaccggcgtttcg
ggtggggagtacgagatatcggaagagagcagagtggtgagagagcggcaggagaaagca
atgcaggaactgctgatgaagcgccgtgcttctgctcttgctgttcccaccaacgacatg
gccgtgagggctcgtcttcggcggctcggcgaacccattactctcttcggggagagagag
atggaaaggcgagacaggttgaggatgatcatggcgaggctggattcgcaaggggagttg
gagaagttgttgaaagttcatgaggaggaggaggctgcagcttctactgctgcagtggag
gatggtgatgatcaaattattcagtaccctttttacactgaagggtccaaagctttgttg
aatgctaggattgacattgccaagtactccattaggagggcggccttgcggctcgaacgg
gctcgaagaaagaaggacgacccagatgaggatatggatgcagagttggacttggttttg
gagcaggcaaaaagtttggaacttgattgcagtgagattggggatgataggccactttcg
ggttgttctttctcacatgatgggcaactgcttgccacttgtgctataagtggagtggcc
aagttgtggagcatgcctgaagcaaagaaggttaccactttaaagggacacacagagcga
ctgactgatgttcagttttctcctgtgcataacctcttagcaactgcctctgctgaccgg
actgcaaggttgtggaacacagaaggaactcagctgttgacatttaagggccatttggac
cgtctggcacgaattgccttccatccatcaggtaagtacttgggtacgactagctttgac
cagacttggaggttatgggatgtagaaactggtgaagagttgcttctacaagaaggtcac
agtaggagtgtctatgggatagacttccatcctgatggatcattggtggcatcctctgga
ctggatgcacttactcgtgtttgggacctccgtactggtagaagtattcttgccttggaa
ggccatgtcaagaaagttcttgcactcagtttctcagcaaatggctattatttagccact
gggggtgaagacaacacttgcagaatatgggatttgagaaaaaagaaatccatatacacc
attccagcacattccaatctcatatcacaggtcaaatttgagccacaagagggatatttc
cttgtaactgcttcatatgatttgacagcaaagatatggtcagcccgagattttaagcct
gtcaagacgctttctggacatgaagcaaaagttacatctttggatatttctggagatggg
caacagattgctactgtatcacatgaccgaaccatcaaactgtggtccagccgttccaac
aagaaggatcaagcaatggatgtggattacagtaccaatgagaaggatcaggcaatggat
gcggattag
DBGET
integrated database retrieval system
