Malus domestica (apple): 103436619
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Entry
103436619 CDS
T03194
Name
(RefSeq) F-box protein SKP2A-like
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
mdm
Malus domestica (apple)
Pathway
mdm04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
103436619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mdm04121
]
103436619
Ubiquitin system [BR:
mdm04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
103436619
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Gene cluster
GFIT
Motif
Pfam:
DUF7885
LRR_6
LRR_4
LRR_At5g56370
F-box-like
F-box
LRR_Zer-1
LRR_8
RsmF_methylt_CI
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
103436619
NCBI-ProteinID:
XP_028957667
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All DBs
Position
05:join(2508791..2509107,2510268..2510619,2510707..2510848,2511245..2511618)
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AA seq
394 aa
AA seq
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MVGKGSIKADDLTLCFEKLMMFASASGSASGGSASVSGSSGGSGGSGGKMKMEGRVMITD
WKDIPIELLLQILALTDDQTVIPASGVCRGWRDAVCLGLTRLSLSWCTKNMNSLVLSLAP
KFTRLQTLILRQDHKPQLEDSAVESIANFCHDLQVLDLSKSFKLSDRSLYALAHGCPNLT
KLNISGCSAFSDIALEYLAGFCRKLEVLNLCGCVRTASDRALQAIGRYCSQLQSLNLGWC
EDVSDVGVMSLAYGCPDLRTVDLCGCVLISDDSVIALANRCPHLQSLGLYYCKNITDRAM
YSLAQSLVKNKPAAMWESRKTRNDEEGLRTLNISQCTALTPSAVQAVCDSFPALHTCSGR
HSLNFSGCMNLTSVHCACAVQAHRTANAFPHSAH
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atggtgggaaaaggaagcatcaaggctgacgacttgaccttgtgctttgagaagcttatg
atgtttgcaagtgcaagtggaagtgcttctggtggaagtgcttctgttagtggtagtagt
ggtggtagtggtggtagtggtgggaaaatgaagatggaaggaagggtgatgatcactgat
tggaaggatattccgatagagctgcttctgcaaatcctggcgcttacggatgatcagacg
gtgatcccggcgtctggagtctgccgtggctggagagatgctgtttgcttgggccttact
cgcctctccctctcatggtgcacaaagaacatgaatagcttggtcctatctctagctcct
aagtttacgagattgcagactctaatactgcgtcaagatcataaaccccagcttgaggat
agtgctgttgagagcattgcaaacttctgtcatgacctgcaggtcctggacctcagcaaa
agcttcaagctcagtgaccgatccctgtatgccttagcacatgggtgcccaaatcttaca
aaactaaacattagtgggtgctcggcattcagtgacattgctcttgaatatcttgctggc
ttttgccgaaaattggaagtcttgaatctttgcggttgtgtcaggactgcatcagacagg
gcattgcaggctattgggcgttactgtagtcagttgcagtctctgaatcttggttggtgt
gaggatgtaagtgatgttggagttatgagtttggcatacggatgccctgatctccgaact
gttgatttgtgtggctgtgtcctaatatcagatgacagtgtgattgcattggcaaatagg
tgtcctcatttgcaatcgcttggcctttactactgtaagaacattacagacagagcaatg
tattccttggcccagagtctagtgaagaacaagcctgcggcaatgtgggaatcccggaaa
accaggaatgacgaggaagggcttaggactctcaacatcagccaatgcacagcgctcacc
ccttctgctgttcaggctgtgtgcgactcattccctgcccttcacacctgctctggaagg
cattccctcaactttagcggctgtatgaatttgacgtcagtgcattgtgcctgtgctgtc
caagctcaccgcaccgccaacgcctttcctcattccgctcattga
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