Malus domestica (apple): 103436779
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Entry
103436779 CDS
T03194
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E
KO
K07466
replication factor A1
Organism
mdm
Malus domestica (apple)
Pathway
mdm03030
DNA replication
mdm03420
Nucleotide excision repair
mdm03430
Mismatch repair
mdm03440
Homologous recombination
mdm03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
103436779
03420 Nucleotide excision repair
103436779
03430 Mismatch repair
103436779
03440 Homologous recombination
103436779
03460 Fanconi anemia pathway
103436779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mdm03000
]
103436779
03032 DNA replication proteins [BR:
mdm03032
]
103436779
03400 DNA repair and recombination proteins [BR:
mdm03400
]
103436779
Transcription factors [BR:
mdm03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
103436779
DNA replication proteins [BR:
mdm03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
103436779
DNA repair and recombination proteins [BR:
mdm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
103436779
MMR (mismatch excision repair)
103436779
DSBR (double strand breaks repair)
HR (homologous recombination)
103436779
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
zf-CCHC_3
CDC24_OB3
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
103436779
NCBI-ProteinID:
XP_008373457
LinkDB
All DBs
Position
06:complement(join(1827337..1829647,1830036..1830334))
Genome browser
AA seq
869 aa
AA seq
DB search
MDVRLTEGAIMKMCTEELNDGSFQPILQVMDVKLVHTAARNGAQPGQDKERYRVVISDGS
HYQQGMLGTQKNTLVRQGMLQSGSIVCMKQFTCNAIQNRLIIIIIELDLVLDKCDFIGNP
VPGPKYSNAQSSGTSPGNSQSLGGTAHSGSTVHQTGTGATPEQPRVNQSFGSAASAYSSN
AEPGRNATMNTPPNYPKPESGFGFPGSAPSSGSYGNQSIGFHNPRSEVPQPPPNSYARPP
QPAYQQPPPVYTNRGPVAKNDAPPRIMPIAALNPYQGRWTIKARVTAKGELRRYNNTRGD
GKVFSFDLLDAHNGEIRATCFNAVADQFYNQIEVGKIYLVSRGSLKPAQKNFNHLNNDHE
ILLDNSSVIQSCSEDDGSIPHHNFNFSPINLVEGLENNTIVDVIGVVSFISPPASIMRKN
GVETQKRTLHLKDMSGRSVEVTLWGNLCNAEGQRLQVMCDSGLFPVLAVKGARVNDFNGK
AVGTISTSQLLIEPNIEKAQEVRNWFEKEGKNTSCISISRETAGVGRTENRKTLSQIKDE
KLGTSEKPDWITVGATISFIKVDSFCYSACPLMIGDRQCSKKVTNNGDGTWRCERCNESV
EACDYRYILQFQTQDHTDSTWVTAFQEGGEEIMGIPAKDLYFIKFEEQDDEKFAEIIQKV
LFTKFIFKLKVKEETFSDEQRVKSTVIKAEKVNHSSHARFHLELMDKLKMENISASASKG
DNVMPSAGMNVAGVGNTAIRQPTPAVNVGYSNNAGREFGAPENQAGHHGNQYGGTFLSGG
SAGSYQICKSCGDAGHSSMNCPTVMNGPGQSSGVGYNNRVSSRPGISNTSGECYKCHQPG
HWARDCPGLNTTPAYGSSGINRGTYGVSN
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgaggttaacagaaggggcgataatgaagatgtgcacagaggagctcaacgac
gggagctttcagcccatcctgcaagtgatggacgtgaagctggtccatacggcggcgcga
aatggagctcagccgggccaagataaggagagatacagggttgtgatctccgacgggtcg
cactaccagcaggggatgctgggcacccagaagaacacactggttcggcaaggtatgctt
cagagcggctccatcgtctgcatgaaacagttcacctgcaacgcaatccaaaaccgcctg
attatcattataattgaattggatttggtgcttgacaaatgtgatttcattggcaatcct
gtaccgggacctaagtattcgaatgcacagtcgtcagggacgtcacctggaaattctcaa
tctcttggtggcactgcacattctggcagcacagttcatcaaactggcacgggggctact
ccagaacagcctagagtaaatcaatcatttggtagcgcagctagtgcttactctagtaat
gctgagccaggaagaaatgctactatgaatacacctcccaattaccctaaaccagagtct
ggatttggttttcctggatcagcaccatcaagtgggtcatatggcaatcagagcataggt
tttcacaaccctagatctgaggttcctcagccaccaccaaattcatatgcccgcccacct
cagcccgcatatcagcagccacctccggtgtatactaatagaggaccagttgccaaaaat
gatgctcctccaagaataatgccaattgctgctctgaatccatatcaaggaaggtggaca
atcaaggctagagtgacagctaaaggagaacttaggcgctataacaatactcgtggcgat
gggaaagtattttcttttgatcttcttgatgctcataatggagaaattcgagcaacctgt
tttaatgctgtggctgatcaattctacaaccagattgaagttggtaagatttatttggtc
tccaggggtagtttaaaaccagctcaaaagaatttcaaccacctcaacaatgaccatgaa
attcttttagataactcatcagtaatacagtcatgttctgaggatgatggttcaattcca
catcataatttcaatttcagtccaataaatcttgttgaaggcttggagaacaacactatt
gtggatgtaataggtgtggtatcatttatcagtccccctgcctctataatgaggaaaaat
ggtgttgagactcagaagagaaccctccacttgaaggacatgtctggtcgtagtgttgaa
gtaactctttggggaaatttgtgcaatgcagaaggacaaagactgcaggttatgtgtgat
tctggtctattcccggtgcttgctgtaaaaggtgctagagtcaatgacttcaatgggaag
gcggtggggaccatttccacaagtcagcttctgatagagcctaatatcgagaaggctcag
gaggtgaggaactggtttgagaaggaaggaaagaatacctcatgtatctctatttccagg
gaaacggcaggtgtgggtagaacagagaaccgaaagacgttatcccaaattaaagatgag
aagctagggacttccgagaagccagattggatcacagttggtgcaaccatttcatttata
aaggttgatagtttttgctattcagcatgcccactcatgattggtgatcgacaatgcagc
aaaaaggttacaaataatggagatgggacttggaggtgtgaaagatgcaatgagtccgta
gaagcatgtgactacagatatatactccagtttcagacacaggaccatactgactcaaca
tgggtaactgcatttcaggagggtggtgaggaaatcatgggaatacctgcaaaagatttg
tattttatcaaatttgaagagcaagatgatgagaagtttgcagaaatcattcagaaggtt
ctctttaccaaattcattttcaagttgaaagtaaaggaggagacttttagtgatgagcaa
cgtgtaaaatcaacagttatcaaagccgagaaagtgaaccattcatcgcatgctagattt
catttggaattgatggataaacttaagatggaaaatattagtgcttctgcctccaaaggg
gacaatgtaatgcctagcgccggaatgaatgttgctggagttgggaacactgcaattaga
cagcccactcctgctgtgaatgttggttatagtaacaatgctggtagagaatttggagca
ccagaaaatcaagcgggtcaccatgggaatcagtatggcggtacgttcctttcagggggt
tctgctggttcatatcaaatatgcaagagttgtggggatgctggccatagctcaatgaac
tgcccaactgtaatgaatggcccaggacagtcatcaggagtgggctataacaatagagtg
tcttctaggccaggtatcagcaatacttctggtgaatgctacaaatgccaccaacctgga
cactgggcaagagactgtcctgggttaaacactactccagcttatggaagcagtggaatc
aaccgtgggacatatggtgtttcaaattaa
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integrated database retrieval system
