Malus domestica (apple): 103437259
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Entry
103437259 CDS
T03194
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm03013
Nucleocytoplasmic transport
mdm03015
mRNA surveillance pathway
mdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103437259
09122 Translation
03013 Nucleocytoplasmic transport
103437259
03015 mRNA surveillance pathway
103437259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103437259
03041 Spliceosome [BR:
mdm03041
]
103437259
Enzymes [BR:
mdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103437259
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103437259
Spliceosome [BR:
mdm03041
]
Complex C
Other components
EJC/TREX
103437259
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103437259
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
103437259
NCBI-ProteinID:
XP_028953975
LinkDB
All DBs
Position
17:complement(join(25637751..25637761,25637997..25638060,25638186..25638269,25638387..25638531,25640346..25640530,25640621..25640677,25641024..25641142,25641251..25641482,25641664..25641836,25642722..25642822,25643548..25643663))
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AA seq
428 aa
AA seq
DB search
MGEVRDNDGYEEELVDYEEEDQNAPNSVSAKPSGDTVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALI
LCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVSIKVHKDLLKNECPHIVVGTPGRVLA
LARDKELGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEPEKNRKLTDLLDALDFNQVVIFVKSVS
RAAELNKLLADCNFPSICIHSGMPQEERLKRYKNFKEGLSRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNQVQSRFEVDIKELPEQI
DTSTYMQV
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagtcagagacaacgatgggtacgaagaggagctcgtcgactacgaagaggag
gaccaaaacgcccccaactccgtctctgccaagccttctggcgataccgtcaaaaaggga
tatgttggcatccatagttcgggattcagagacttcctgttgaagccggagcttcttcga
gcaattgtggattctggattcgaacatccttcggaagttcaacatgagtgcatccctcaa
gctattttaggaatggatgttatttgtcaagcaaaatctgggatgggaaaaactgccgtc
tttgttctgtcaacccttcagcaaatagatccagtagctggtcaggttgctgctcttatt
ctttgccacacgagagaattggcttaccagatttgtcatgaatttgagaggtttagtact
tatttgccggacctgaaggttgcagttttctatggaggtgttagtatcaaggttcacaaa
gatttgctaaaaaatgaatgtcctcacattgtcgttggtacacctgggagagtattagct
ttggcaagagacaaagagcttggactgaagaatgtcagacactttattcttgatgaatgc
gataagatgcttgagtcacttgacatgaggagagatgtgcaggagatatttaagttgact
cctcatgacaagcaagtgatgatgttttcagcaacactaagcaaggaaatacgccctgtt
tgcaagaagtttatgcaagatcccatggaaatttatgtggatgatgaggccaaattgact
cttcatggtctcgtacagcactacatcaaattgagtgagcctgagaaaaaccgcaagttg
actgacctccttgatgcattggatttcaaccaagttgttatttttgtaaagagtgtaagc
agggcagctgagctgaacaagttacttgctgactgtaacttcccctccatctgcattcac
tctggaatgcctcaggaagaaaggctaaaacgttacaagaatttcaaggaggggctttca
agaattcttgtggcaacagatttagtaggaaggggaattgacattgagcgtgttaacatt
gttatcaattatgacatgcctgattctgctgatacctacttgcacagggttggcagagct
ggtaggtttggtaccaaggggctagcaattacatttgtatcttctgcatctgattcagaa
gttcttaatcaggtccagtcaaggtttgaggtggacataaaggagcttcccgagcaaatt
gatacttctacttacatgcaagtgtaa
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