Malus domestica (apple): 103437546
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Entry
103437546 CDS
T03194
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
KO
K14829
pre-rRNA-processing protein IPI3
Organism
mdm
Malus domestica (apple)
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mdm03009
]
103437546
Ribosome biogenesis [BR:
mdm03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
103437546
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR5
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_EML
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_IFT140_1st
Beta-prop_VPS8
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_2nd
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_IP5PC_F
PEP5_VPS11_N
Beta-prop_IFT122_1st
Beta-prop_SPT8
VPS8_N
VPS11_N
Motif
Other DBs
NCBI-GeneID:
103437546
NCBI-ProteinID:
XP_008374249
UniProt:
A0A498JKD6
LinkDB
All DBs
Position
06:join(27448789..27449106,27450070..27450183,27450314..27450447,27450556..27450700,27450806..27451008,27451272..27451393,27451649..27451860,27451972..27452217)
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AA seq
497 aa
AA seq
DB search
MQCASNNHKLSIKLDISLCKFRTQREREREMGSGGGEAVVVCSDKRMGTGITIWNIDTGD
RLLHIPTCASPARGLVCLRNQFLVAAQIHKPGSVGGGAISMWKLNKPQKPIQSYPLEAIG
PLSCTKDGLYLAGGALSGNTYLWEVTNGKLLKTWHGHDKSLSCMLFSDDGSLLVSGSDDG
MICVWNLISLLDVENVESLPSPLHYSMEHKSSITGLLTTSGISSPVLISSSLDGSYKVWD
LVLGNLMHTQVYPLGITAVALHPTKQLIFSGSIDGSIFVNKLEIGLVEDYLVGAEDHSPV
LKEHNGSVTALTFSKSGLISASEDCTICIWDITSFEIIRRFNHQKGPVTNLSVIPQSSLL
PVSNHRKLSNALGVSILDKYPQPANSSEEKITLFPSCQPSMNFQTSDSCQQIYDMKKEGT
VAAMEMKLETCLEDRMRATKMAKHVMEMNRHLQSRLLDLMESRLSQPKSSEIDSPSMKKS
KTVMLENPPLQQEEEQR
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgcaatgtgcctcaaataatcacaaactctctataaaactcgacatctctctttgcaaa
ttcagaacacagagagagagagagagagagatgggaagtggtggcggtgaggcggtggtt
gtgtgcagtgacaagaggatgggaacagggataactatatggaacatagacacaggggat
cgactccttcacataccaacctgcgcttctcccgctcgtggtcttgtgtgcttgagaaac
cagttccttgtagctgctcagattcacaaacctggctccgttggcggcggcgccatctct
atgtggaagttgaacaagcctcagaagcctattcagagctacccgctggaggcaattggg
ccactttcttgcacaaaggatggtctatatcttgcaggtggcgctctttctggaaacact
tacctttgggaggttactaacggaaaattgctcaaaacttggcatggtcatgacaaatct
ttgagctgtatgttgttttccgatgatggttctcttcttgtttctggttccgatgatggg
atgatatgtgtgtggaacttgattagtttgctggacgtggaaaatgttgaaagccttccg
tcaccattacattattcaatggagcataaatcttctataaccggcctgttaactacgtca
ggcatctcaagtccggtgttaatatcaagctcacttgatggctcatacaaggtttgggat
ctagtcttgggaaacctcatgcatactcaagtttatccactagggataactgcagttgct
cttcacccaacgaagcagttaattttctccggaagtatagacggaagcatttttgtgaac
aaacttgaaatcggactggtagaggattatttggttggtgctgaagatcactcacctgtg
ctgaaagaacacaatggatctgttaccgcattaaccttcagcaaatcgggtctgatatcc
gcatctgaggactgcaccatctgcatttgggatatcaccagttttgaaatcatccgaaga
ttcaaccatcagaaagggcctgtgactaatctgtcagtgattccacagtcctcgttgctt
ccagtgtcaaaccatcgtaaactttctaatgcacttggtgtttccatcctcgacaagtat
ccgcaacctgcaaactcatcggaggagaaaatcactctttttccatcatgccaaccctcc
atgaatttccaaacctcggattcatgccaacaaatatatgacatgaagaaagagggcact
gttgcagcaatggagatgaaattggaaacatgtctagaggaccgaatgagggctacaaaa
atggcaaagcatgtgatggagatgaacaggcatttgcaatcacgtttgctagacttgatg
gagagcagattatcgcagcccaagtctagcgaaatcgattcaccttcgatgaaaaagagc
aagactgtcatgcttgaaaaccccccattgcagcaggaggaggagcagcgataa
DBGET
integrated database retrieval system
