KEGG   Malus domestica (apple): 103437904
Entry
103437904         CDS       T03194                                 
Name
(RefSeq) cleavage stimulation factor subunit 50 isoform X1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
mdm  Malus domestica (apple)
Pathway
mdm03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    103437904
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103437904
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     103437904
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz WD40_WDHD1_1st WDR55 EIF3I WD40_Gbeta Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_EML ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_WDR36-Utp21_1st Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_Aladin WD40_RFWD3 WD40_MABP1-WDR62_1st Beta-prop_DCAF4 Beta-prop_RIG_2nd Cytochrom_D1 Beta-prop_NWD2_C Beta-prop_SCAP Beta-prop_WDR41 Ge1_WD40 Beta-prop_NOL10_N Beta-prop_IFT122_1st WD_LRWD1 Mito_carr Tricorn_N TPM_phosphatase
Other DBs
NCBI-GeneID: 103437904
NCBI-ProteinID: XP_008374651
LinkDB
Position
06:complement(join(32596189..32596344,32596453..32596509,32596769..32596877,32597196..32597347,32597457..32597557,32597963..32598020,32598102..32598153,32598380..32598450,32598767..32598853,32598936..32599019,32599144..32599216,32599395..32599519,32599620..32599703,32600368..32600469))
AA seq 436 aa
MEKSSLEQILQDAKLHRQLNSLIVAHLRDSNLYQAASAVASATMTSLNVEAPRNRLLDLV
AKGLAVEKDEMSRGISSSAYDLGTSVASGYGGLPAPRTVAVDFGAVQETKGLSKSFPKHE
TRHLSEHKNIARCARFSPDGKFVATGSSDTSIKLFEVSKIKQMMLPEARDGPVRSIIRTF
YDHLQPINDLDFHPQNTVLISGSKDQTIKFFDFSKMTAKRAFRVIQDTHNVRSVSFHPSG
DFVLAGTDHPIPHLYDINTFQCYLSANAPEINDNGAINQVRYTATGGMYVTASKDGVLRL
WDGATAKCVRSIPAHVMAEATSANFTKDQRFVLSSGKDSTVKLWDVGTGKLVKQYLGATH
TKLRCQAVFNDTEEFVLSIDEPANEIVIWDAMTADKVAKWPSNHIGAFRWLAHSPTEAAF
VTCGTDRSIRFWKESM
NT seq 1311 nt   +upstreamnt  +downstreamnt
atggagaagagcagcttggagcaaattctgcaagatgccaagctccacaggcagctcaat
tccctcatcgtcgctcatcttcgcgacagcaatctttatcaggcagcaagtgccgttgct
tccgcaacaatgacatcattgaatgtcgaagccccacgtaataggcttcttgacctggtt
gccaagggacttgcagtggagaaagatgagatgtcgagagggatttcttcatctgcatat
gatttgggcacatcagtagcttctggatatggtggactcccagcacctcgcactgttgct
gttgattttggtgctgtgcaggaaacaaaaggcttgtcgaagagttttccaaagcatgag
acacgccatctttcagagcacaagaatattgccagatgtgcaaggtttagtcctgacggg
aagtttgttgctactggaagttctgacacgtcaataaagctttttgaggtttcaaaaatt
aagcaaatgatgcttccagaggctagagatggtcctgtgagatccatcatacgcacattc
tatgatcacttacaacctataaatgacttggatttccatcctcagaacactgttcttata
tctgggtcaaaagatcagaccataaagttctttgatttttccaagatgacagcaaagaga
gcattccgagttatccaggatacacacaacgtgcgttcagtgtcttttcatccttctgga
gattttgttttagctggtactgatcatccaattccacacttgtatgatatcaataccttc
cagtgttacctatcagcaaatgccccagaaatcaatgataacggagcaataaatcaggtc
aggtatacagctacaggtggcatgtatgttacagcttctaaagatggtgttcttcgttta
tgggatggtgcaactgccaagtgtgtacgctccataccagcacatgtgatggcagaggca
accagtgcaaactttaccaaggatcaaaggtttgttctctcttctggaaaggattctacc
gtgaagctttgggacgttggcactgggaaactggttaagcaatatctaggagctacacat
actaaattgcggtgtcaggctgtttttaatgatactgaagaatttgtactgtccatcgat
gaaccggccaatgagattgttatctgggatgctatgacagcggacaaagtagcgaagtgg
ccttccaatcatattggtgctttccgttggcttgcacactcaccaacggaggccgcattt
gttacctgtgggactgacagatcaatccggttctggaaggaaagtatgtaa

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