KEGG   Malus domestica (apple): 103438041
Entry
103438041         CDS       T03194                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103438041
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103438041
   03012 Translation factors [BR:mdm03012]
    103438041
Enzymes [BR:mdm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     103438041
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     103438041
Translation factors [BR:mdm03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    103438041
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD dsrm HA2_N AAA_22 AAA_19 nSTAND3 T2SSE AAA_30 ATPase AAA_16 Dicer_dimer
Other DBs
NCBI-GeneID: 103438041
NCBI-ProteinID: XP_008374797
LinkDB
Position
06:join(34038369..34038809,34039185..34039339,34039418..34039505,34039716..34039961,34040195..34040290,34040389..34040577,34040722..34040881,34040961..34041091,34041436..34041609,34041688..34041960,34042260..34042454,34042681..34042884,34043093..34043162,34043251..34043399,34043696..34044004,34044379..34044438,34044555..34044707,34044801..34044911,34045072..34045566)
AA seq 1232 aa
MPYSALFQCYIFRTTTMSLKHSTTSTTPVLVSLRGTHHHHRHRHHVALIRPSLLLRCSMM
NSRYHHSLCLAPARNWNACYYLPRYAGDVTCQASSRAAELDWKQRQQLRSSAVPFYQQNL
SYGRFAYQDASASEESDAELGSSQRQKGGSTLDNIDEWRWKLTMLLRNKDEQELVSREKK
DRRDFDHLSALASRMGLYSRQYSRVVVFSKVPQPNYRPDLDDKRPQREVVLPFGLHREVD
AHLKAYLSQKPMSQGNLSDFSLSRSNSNRSITNDGGHYEQQEPLIQNTDAMEKILQRKSL
QLHNRQRHWQESPEGQKMLELRKSLPAYKEKDALLKAVSENQVVVVSGETGCGKTTQLPQ
YILESEIEADRGASCSIICTQPRRISAMAVSERVAAERGESLGESVGYKVRLEWMKGRDT
RLLFCTTGILLRRLLVDRKLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM
SATLNAELFSSYFGRAPTIHIPGFTYPVRTHFLENILEMTGYRLNQYNQIDDYGHEKSWK
MQKQAQGLKKRKSQIASAVEDVLEAADFREYSPRTQESLSCWNPDSIGFNLIESLLLHIV
RKERPGAILVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMPSSEQKLIFDKPED
GVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAASRQRRGR
AGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSKALQPP
EPLSVQNAVEYLKIIGALDDYEDLTVLGRHLSVLPVEPKLGKMLILGSIFNCLDPVMTVV
AGLSMRDPFLMPHDRKDLAESAKAQFSAHDNSDHLALVRAYDGWRSAERTQSGYEYCWRN
FLSVQTLKAIDSLRKQFFFLLKDAGLADHNTESCNTWSHDEHLVRAVICAGLFPGICSVV
NKEKSIMLKTQEDGQVMLYSSSVNGSIPKIPYPWLVFNEKVKVNSVFLRDSTGISDSVLL
LFGGNISMGGLNGHLKMLGGYLEFFMNPTLADTYLCLKKELDELIHNKLLNPKLDMQSHT
NLLSALRLLVSEDQCEGRFVFGRKVPVPSMKATQEKLPNLKGTTKKVAENNNYKNHLQTL
LTRAGHDIPTYKTKPLKNNQFRSTVIFNGLNFVGKPCNSKKEAEKDAAAEAVLWLKGENH
SSSTDIDHMSMLLKKSRKTSQKRTSFDSAKWG
NT seq 3699 nt   +upstreamnt  +downstreamnt
atgccgtactccgccctcttccagtgctatatattccgaaccaccaccatgtccctcaaa
cactccaccacttccaccacccccgttctcgtctctctacgcggaacccaccaccaccac
cgccaccgccaccacgtagctttgataaggccgtcgctgctactgcgatgctccatgatg
aacagccggtaccaccactcgctctgccttgctccggcccggaattggaatgcgtgctat
tatctgccccggtacgcgggggacgtcacgtgccaggcatcgtctcgggcggcggagctg
gattggaagcagaggcagcagctgaggagttcggcggtgccgttttaccagcagaattta
agctatgggcggtttgcgtaccaggacgcctccgcgagtgaggagtccgatgccgaattg
gggtcgtctcagcgccaaaagggtggttcgacccttgataacattgatgaatggagatgg
aagttaaccatgcttcttcgcaacaaagacgagcaagaattggtgtccagggaaaaaaag
gatagacgcgattttgatcatctttcagcactggcaagcaggatgggtttgtatagccgt
caatattctagagttgtagtatttagcaaagttcctcagcccaattacagacctgatctt
gatgataagcggccacaaagagaggttgtcttaccttttggacttcatagagaagtagat
gctcatctcaaagcctacctatctcaaaagccaatgagccaaggaaatttgtcagacttt
tccttgtcaagatcaaacagtaatagaagcattactaatgatggaggtcattatgagcag
caggagcccttgatacagaatacagatgccatggagaaaattcttcagcggaaaagcttg
caactgcataataggcaacgacattggcaggaatcgccagaaggtcaaaagatgcttgag
cttcgtaaaagtctgcctgcatataaggagaaagatgcactgttaaaagctgtatcagaa
aatcaggtcgtagttgtctccggcgaaacaggttgtggtaaaactacacaacttcctcag
tacattttagaatctgagattgaagctgatcgcggagcttcctgcagtattatttgtacc
cagcctagacggatatctgccatggctgtttctgaaagagtagctgcggaacgaggggag
agtctgggggaatctgttggttacaaagttaggcttgaatggatgaaagggcgggacacc
cggcttcttttttgcaccacaggcatattattaaggagattacttgttgacagaaagttg
agaggtgttacacacgtcattgttgacgagattcatgaacggggaatgaatgaagatttt
ctacttattgttctgaaagaacttctccctcgccggccagagttgaggttgattttgatg
agtgccaccctaaatgctgagcttttctcctcctactttggtcgtgctccaacgatccat
attcccgggtttacttacccagtccgaacacattttctggagaacattctagaaatgact
gggtatcggttaaatcaatataatcagattgatgattatggtcatgaaaagtcgtggaaa
atgcagaaacaagctcaaggtttaaaaaagaggaagagccaaattgcttctgccgtagag
gatgtacttgaagctgccgactttagggagtatagtccaaggactcaggagtctctgtcc
tgttggaatcctgactctattggttttaacctcattgagagtcttcttttacacatagtc
aggaaagaacggcctggcgcaattttagtttttatgacgggttgggatgacataaactcc
ttgaaggatcaactccaagctcatcccctattaggagatcctagcagggtcctactgctg
gcatgtcatggttccatgcctagctctgagcagaaattgatatttgataagccagaagat
ggtgttcggaaaatagttctagctacaaacatggctgagactagtatcactatcaatgat
gtagtttttgttgttgattgtggaaaggcgaaagagacatcatatgatgcactaaataac
actccctgtttgcttccttcctggatttcaaaggctgcttctcggcaaagaagaggcaga
gctggtcgtgttcaacctggcgagtgttaccatctctaccccagatgtgtatatgatgcc
tttgctgattatcagttgcctgaacttttgaggactccattgcaatcattatgtttacaa
atcaaaagtctacaacttggaagtatttcagagttcctatctaaggccttgcagccgccg
gaacctctgtcggttcaaaatgctgttgagtatttaaagatcattggggctttagatgat
tatgaggatctgacagtgttaggacgtcacctgtcagtgcttcccgttgagcctaaactt
ggaaaaatgctcatattggggtctattttcaactgtttggatccagtaatgactgttgtc
gcaggccttagtatgagagacccattccttatgccgcatgacaggaaggatcttgcagag
tccgcaaaagcacagttctctgctcatgataacagtgatcatcttgctcttgtccgagct
tatgatggttggagaagtgctgaaagaacacaatctggctatgagtactgctggagaaac
tttctttctgtacaaactctgaaagccattgactctcttcggaagcagttcttctttttg
ctcaaggatgcaggtctggctgaccataatacagaaagctgcaatacatggagccatgat
gagcatcttgtccgagcggtcatctgtgctggattatttcctggaatatgctctgtcgtg
aacaaagagaagtcgattatgcttaaaacacaggaagatggacaagtgatgctatactcg
agttctgtcaacggaagcatacccaaaattccatatccatggctagtcttcaacgaaaag
gtgaaagtgaattcggtttttctccgggattcaactggtatatctgattctgtgctcctt
ttgttcgggggcaacatttccatgggtggcctgaatgggcacttgaagatgttgggagga
tacttggagtttttcatgaatcccacattagcagatacatatctttgcttaaagaaggag
cttgatgaactgattcataataagctcctgaatcccaaattggatatgcaatcacataca
aacctcctatcggctctaagattactggtctcagaggatcaatgtgagggtagatttgta
tttggtcgcaaggtgccagtgccctcaatgaaggcaacacaagagaagttaccaaactta
aaaggcaccacgaagaaagttgcggagaacaataattacaaaaatcacctgcaaacattg
ctcaccagggccgggcatgatatacccacctacaaaacaaaaccattgaaaaacaaccag
ttccgttccacagtgatcttcaatgggttgaactttgtagggaagccttgcaatagtaag
aaagaagcagagaaagatgcagctgcagaagctgtactctggttgaagggagaaaaccat
tcttcgtccacagatattgaccatatgtcgatgcttcttaagaaaagtagaaagacaagc
cagaaaaggacctcatttgatagtgccaagtggggttaa

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