KEGG   Malus domestica (apple): 103438265
Entry
103438265         CDS       T03194                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4-like isoform X1
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
mdm  Malus domestica (apple)
Pathway
mdm03020  RNA polymerase
mdm03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    103438265
  09124 Replication and repair
   03420 Nucleotide excision repair
    103438265
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mdm03021]
    103438265
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103438265
Transcription machinery [BR:mdm03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     103438265
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      103438265
SSDB
Motif
Pfam: RNA_pol_Rpb4 EzrA
Other DBs
NCBI-GeneID: 103438265
NCBI-ProteinID: XP_008375025
LinkDB
Position
06:join(34718738..34718786,34719253..34719361,34719519..34719596,34719832..34719865,34719942..34720010,34720256..34720333)
AA seq 138 aa
MLRAEDEDASELKLGDDFLKAKCLMNSEVAILLEHRCDQMKHMSGESMHQLPQVLEKSLQ
YVKRFSRFTNQGSVKQVREVLSRYQLAEFELAVIGNLCPETVEEAKAVVPSLKTKGRGHD
DEAIDRLLNDLMMIKKFE
NT seq 417 nt   +upstreamnt  +downstreamnt
atgctaagagcagaagatgaagacgcttcagaactcaaacttggagacgattttttgaag
gcaaagtgtctaatgaatagtgaggttgccattcttcttgagcatagatgtgatcagatg
aagcatatgtccggcgaatcaatgcaccaacttccccaagtgttggagaaatcactgcag
tatgttaagcgctttagtcgcttcacgaatcagggctctgtgaagcaagttcgagaagtt
ctcagtagataccagttggctgaattcgagcttgctgtgattggaaatctttgtcctgaa
actgtggaggaagccaaggcagttgtgccttctctcaagacgaaaggacgtgggcacgac
gatgaagccattgacagactgttgaatgacctaatgatgattaaaaagtttgagtga

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