KEGG   Malus domestica (apple): 103438288
Entry
103438288         CDS       T03194                                 
Name
(RefSeq) uncharacterized protein isoform X1
  KO
K12580  CCR4-NOT transcription complex subunit 3
Organism
mdm  Malus domestica (apple)
Pathway
mdm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103438288
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103438288
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103438288
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     103438288
SSDB
Motif
Pfam: Not3 NOT2_3_5_C DUF5965
Other DBs
NCBI-GeneID: 103438288
NCBI-ProteinID: XP_008375050
LinkDB
Position
06:join(35128780..35128872,35128968..35129099,35129209..35129346,35129491..35129541,35130047..35130136,35130219..35130365,35130507..35130614,35131302..35131358,35131784..35132521,35132777..35132944,35133214..35133379,35133706..35133848,35134468..35134746,35134847..35134981,35135072..35135253,35140625..35140691)
AA seq 897 aa
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPREKAKSETRDWINNVVGELESQIDSFEAEIEGLSFKKGKGRPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLEDYVERNQEDFDEFSEVDELYNTLPLDKVES
LEDLAIIPPGLIKGAPMLGLKTNLAPPASPLPPAATSTNQQSVSVQEPVEDAVSQDSNAD
NIPRTPPPRSGVLSSSPASTPTGSHATPVSASVPTHNLPSVPSVLAIPGSNAVRGVTENA
GAANSSSPVSLSASVKEEESASFPGRRPSPSLSDAGLVRGISRGGFSAPIPSSIPVSSSN
VSPSNSALGAVPSVSDVTKRNILGADERIGNSGVVQPLVSPITNRLILPQAAKASDGSAP
VDSSNASEAAIPGRAFSPSIVSGMQWRPGSSFQNQNEAGIFRGRTEIAPDQREKFLQRLQ
QVQQQGHSTILGMPPLAGGNHKQFSAQQNPLLQQFNPQNSSVSSQAGPGLGVQPPGLGTV
APTTLQQQLNSIHQQSNQQALMSVGPKETDVSHPKVEEQQQQQNIPDESTADSTSSGLVK
NLMNEDDLKASYAVDSLAGVSGSSTEPAQVPRDIDLSPGQPLQSNQPSPSLGIIGRRSVS
DLGAIGDNLSGSTANSGVLHDQSYNSQMLEAAYYKLPQPKDSERARSYTPRHPAKTPLSY
PQAQAPIVNNPAFWERLGLEPYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNT
WFQRHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
NT seq 2694 nt   +upstreamnt  +downstreamnt
atgggggcgagtcggaagctccagggcgagatcgaccgcgttctcaagaaggtccaagaa
ggcgtcgacgtcttcgatagcatttggaacaaggtttacgatacggacaatgcgaaccag
aaagagaagtttgaggccgacctcaagaaggagattaagaagcttcagaggtacagggac
cagatcaagacttggattcaatccagtgaaatcaaggataaaaaggtcagtgcctcttat
gagcaggctctggtggatgctcgcaaactcattgagcgcgaaatggaaaggttcaagata
tgtgaaaaggagacaaaaacaaaagcattttctaaagaaggattgggccaacaacctaaa
accgatccgagggagaaggccaaatcagagacaagggattggataaacaacgtggttggg
gagttggagtctcagattgacagctttgaagctgagattgaagggctatcttttaagaaa
gggaagggcagaccacccagactgacccatctagagacatcaattactcggcataaggct
catataatgaagttagaactgatcttgaggctattggataatgatgagctgagtcctgag
caggtcaatgatgttaaagactttttggaagactatgtggaacgcaatcaggaggatttt
gatgaatttagtgaagttgatgagctttacaacaccttaccattggacaaggtggagtcc
cttgaagatctggccattattcctcctggtcttatcaagggtgcaccgatgcttggcttg
aagactaatttggcaccacccgcatctccactgcctcccgctgctacttctactaatcag
cagagtgtttctgtccaagagccagttgaagatgcagtttcccaggacagtaatgctgat
aacattcctagaactccacctcctagaagtggtgtgctttcatcttctcctgcatcaaca
ccaactgggagtcatgcaactcctgtctctgcaagtgttccaactcataatctgcccagt
gtgccaagtgttttggccattccaggttcaaatgctgttcggggtgtcacagagaatgca
ggggctgctaattcttcatctcctgtaagtttgtctgcttctgtgaaggaagaagagtca
gcaagcttccctggccgtagaccatcaccatctctttctgatgctggacttgtaaggggc
atcagtcgaggtggcttctctgccccaattccatctagtatccctgttagctctagcaat
gtgtctcctagtaatagtgcccttggtgcagttccttcagtttctgatgtgaccaagaga
aatatattgggagctgatgagagaattgggaatagtggtgtggtgcagccacttgtttcc
cctataactaacagactgatcttgcctcaagctgccaaggctagtgatggaagtgctcca
gttgattctagtaatgctagtgaggctgctatacctggcagagcattttctccttctatt
gtctctggcatgcagtggaggcctggaagttcctttcaaaaccaaaatgaagcagggata
tttcgtggaaggactgaaatagcacccgatcagagggagaaatttttgcagcggctccaa
caagtgcagcaacaaggtcacagtaccattcttggcatgcctcctcttgctggtggaaat
cataagcaattttctgcacagcaaaacccacttttgcaacagtttaatcctcaaaactca
tctgtatcttctcaagctggccctggactaggggtacagcccccaggtcttggtactgtt
gcacctaccaccttacagcagcagctaaattctatccatcaacagtctaaccaacaggca
ttgatgtcggttggaccaaaagaaactgatgtaagtcatccaaaagttgaggaacaacag
caacaacagaatatacctgatgagtctactgcggactctactagttctggactcgtaaag
aatctaatgaatgaagatgacttgaaagcctcatatgcagttgattctctggctggagtt
tctggctcttcaacagagcctgctcaagtaccacgagatattgatctctctcctgggcaa
cctttacagtccaatcaaccttctcctagccttggcattattggccgaagaagtgtttct
gatcttggtgcaattggtgataacctttctggatcaactgctaattctggggtattgcat
gatcagtcgtataattcgcagatgcttgaggctgcttactacaaacttccacaacccaaa
gactcagaacgtgcaaggagctatactccaaggcaccctgcaaaaacacctctaagctac
ccccaagcgcaagcacctattgttaataatcctgccttctgggaacggttaggtcttgaa
ccatatggcactgataccctgttctttgcattttactatcagcagaacacttatcagcaa
tatttggcggcaaaagaactgaagaagcaatcttggagataccataggaaatataacact
tggtttcaacggcacgaggagccaaaagttgccacagatgaatatgaacaggggacgtat
gtgtactttgactttcatattgcaaatgatgatctacaacacggatggtgccaaaggatc
aaaactgagttcacttttgaatataactatcttgaggatgagcttatcgtatag

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