KEGG   Malus domestica (apple): 103438377
Entry
103438377         CDS       T03194                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
mdm  Malus domestica (apple)
Pathway
mdm03018  RNA degradation
mdm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103438377
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103438377
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103438377
   03041 Spliceosome [BR:mdm03041]
    103438377
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103438377
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     103438377
Spliceosome [BR:mdm03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    103438377
SSDB
Motif
Pfam: LSM Hfq DUF150_C
Other DBs
NCBI-GeneID: 103438377
NCBI-ProteinID: XP_028960842
LinkDB
Position
07:join(757354..757356,757444..757525,757969..758040,758159..758211,759931..760020)
AA seq 99 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFSQPDGA
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtcagggaggaaagaaacagttttggacctggccaagtttgtggacaaaggtgtccaa
gtcaagctcaccggcgggagacaagtgacagggactctgaaaggatatgaccagttgtta
aaccttgtcctagatgaagcagtggagtttctaagagattctgatgatccattgaagacc
actgatcagaccaggcgccttggcctcatagtttgcaggggaaccgctgtaatgcttgtg
tcgccgacagatggtacagatgagatcgccaacccttttagccagccagatggtgcctaa

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