KEGG   Malus domestica (apple): 103438549
Entry
103438549         CDS       T03194                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 5C
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
mdm  Malus domestica (apple)
Pathway
mdm03020  RNA polymerase
mdm03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    103438549
  09124 Replication and repair
   03420 Nucleotide excision repair
    103438549
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mdm03021]
    103438549
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103438549
Transcription machinery [BR:mdm03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     103438549
  RNA polymerase III system
   RNA polymerase III
     103438549
  RNA polymerase I system
   RNA polymerase I
     103438549
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      103438549
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N SOCS_box OCC1
Other DBs
NCBI-GeneID: 103438549
NCBI-ProteinID: XP_008375308
LinkDB
Position
07:complement(join(3068628..3068753,3069406..3069519,3069944..3070120,3071195..3071473))
AA seq 231 aa
MAIVKGDGVVPGSDGGSGRPGCITSHVAEGSVESTRFYLCRRTVMEMLRDRGCNVSDLDL
NLSLTEFLSEFGPNPDHERLSVCVHLRSKPSKKIVVIFCGTDEIRKRNMCGIYAGLPNKA
SIHQLILVLQSKMNCYARKELEKYPFKVDTFHISDLLVNITKHVSQPKLEMLTAEEKKKL
LMKYNLEDKKLPLMLATDATARYYGLEKGQVVKVNYSGGFAGPLETYRCVA
NT seq 696 nt   +upstreamnt  +downstreamnt
atggctatcgtgaaaggggatggcgtcgttccgggcagcgacggaggcagcggaaggccg
gggtgcataacgagccacgtggcagaagggagcgtggagagcaccaggttctacctgtgc
cgtcgtacagtcatggaaatgctgagggaccgaggctgcaacgtctctgacttggacctc
aatctctcgctcactgagttcctctccgagttcggccccaacccggaccatgaacgcctc
agcgtctgcgtccatctacgctccaagccctccaagaagattgttgtcatcttttgtgga
actgacgagataaggaaacgcaacatgtgcggtatctatgctggcctcccgaacaaagca
agtattcaccagctgattcttgtcttacaaagtaaaatgaactgctatgctcggaaagaa
cttgaaaagtatccatttaaagttgacaccttccatatctcggacttgctggtgaatatc
acaaagcatgtttcacagccgaagcttgagatgcttactgctgaagaaaagaagaagctg
ctaatgaaatacaacttggaagacaagaagctccctctgatgctggcaactgatgcaact
gcacgatactacggattggagaaggggcaggtggtaaaagtcaattacagcgggggattt
gctggaccacttgaaacttaccgctgcgtcgcttga

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