KEGG   Malus domestica (apple): 103438557
Entry
103438557         CDS       T03194                                 
Name
(RefSeq) flowering time control protein FY
  KO
K15542  polyadenylation factor subunit 2
Organism
mdm  Malus domestica (apple)
Pathway
mdm03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    103438557
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103438557
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     103438557
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40 Beta-prop_WDR5 Beta-prop_THOC3 WD40_CDC20-Fz WD40_Prp19 Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_Gbeta WDR55 Beta-prop_EML EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_1st DSE1_N Beta-prop_WDR90_POC16_2nd ASA1 ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_Aladin CFAP251_N Beta-prop_WDR41 Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_WDR35_TULP_N Beta-prop_NOL10_N Beta-prop_DCAF4 Beta-prop_SCAP eIF2A WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_Vps41 WD40_RFWD3 PAC11 NBCH_WD40 Beta-prop_HPS5 Tricorn_2nd Pep3_Vps18 WD40_like Beta-prop_DCAF12 PROPPIN WD_LRWD1
Other DBs
NCBI-GeneID: 103438557
NCBI-ProteinID: XP_008375316
LinkDB
Position
07:join(3177956..3178220,3178608..3178699,3179220..3179288,3179428..3179532,3180925..3181020,3181432..3181514,3181608..3181679,3181750..3181847,3182967..3183026,3183117..3183177,3183260..3183347,3183469..3183532,3184205..3184283,3184830..3184919,3185856..3185944,3186336..3186853,3187069..3187305,3187402..3187470)
AA seq 744 aa
MMYPDPQQQHHQQQLQQQHPQHQQQQHPQQHQQYQQQHPQQHQQQGGEFHRGPPPPAPMM
RQPSASSTNMPPEYHNQPGLAPPLPPYDAHGDSFPGKRMRKLTHRRAVDYTSTVVRYMQI
RMWQRDARDRTVLQPTPAAAIDMLPPVAYSDNPSTSFAAKFVHTSLNKNRCSINRVLWTP
TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIKYWQ
NNMNNVKANKSAHKESVRDLSFCKTDLKFCSCSDDNTVKVWDFARCQEERTLTGHGWDVK
SVDWHPTKSLLVSGGKDNLVKLWDAKSGRELCSFHGHKNMVLSVKWNQNGNWVLTASKDQ
IIKVYDIRAMKELASFRGHRKDVTALAWHPFHEEYFVSGSSDGSIYHWLVGHETPQVEIP
NAHDHSVWDLAWHPIGYLLCSGSNDHTTRFWCRNRPGDTGRDKFNPGQNQGYGEQNPAFG
GRMTGNFPVPEGPPTPGPLVPGLTRNEGTIPGVGVAMPFSLDASNQGEQQQPHALSMPLG
APPLPPGPHPSLLAANQQQQYQQNPQQMPQQQHQHQGHPQQMPPMPMAPPNMPQLQPPSH
LPLLPHPHLHRPPPQMPPLGMPSSGPGSLSMPSSVPTSHSMPMGIQGTMNQMGHPLPQGH
FMGMNPMHSGSLPTSGGGFPNGMPNMQGPTNASGPQMYPQGGTFNRGQPGQIPMHPGYNP
YQSRGQSGMPQPPPGPPPHGQTPQ
NT seq 2235 nt   +upstreamnt  +downstreamnt
atgatgtaccctgatccacaacagcaacaccaccaacagcagcttcagcagcagcacccg
caacatcagcagcagcagcatccccaacaacaccagcaatatcagcagcaacatccgcag
caacatcagcagcaaggtggagaatttcatagggggccgccgccaccggccccaatgatg
cgtcagccgtcagcctcttcaactaatatgcctccagagtatcacaaccaacctgggctc
gctcctcctcttcctccttatgatgctcatggtgacagttttcctggaaaaaggatgaga
aagcttacacacaggagggcagttgattatactagcaccgttgtgcgatatatgcagatt
cgaatgtggcagcgcgatgcaagagatagaacggtattgcaacccacacctgcagcagca
attgatatgttgcctccagttgcctactcagataatccatccactagctttgctgcaaag
tttgtacacacttctttaaacaagaatcgttgttcgattaatcgggttttgtggactcct
acaggaaggcgtcttattactggctctcaaagtggggaattcactctttggaatgggcaa
tcatttaactttgaaatgattcttcaggctcatgatcaagcaatcaggtctatggtatgg
agtcataatgacaattggatggtatctggtgatgatggcggtgcaataaagtactggcag
aacaatatgaataatgtaaaggccaataaatctgctcataaagaatctgttcgtgactta
agcttctgcaagactgacttgaagttctgttcctgctctgatgataatactgttaaagtt
tgggactttgcacggtgccaagaagagcgcacattaactggccatggttgggatgtgaag
agtgttgactggcaccctactaaatccctactagtttcaggtgggaaagataatcttgtt
aaactttgggatgctaagtcagggcgagaactctgttcatttcatggccataaaaatatg
gtgctctcagttaaatggaaccaaaatggtaactgggtgctaactgcttcgaaggatcaa
atcatcaaggtttatgacataagggccatgaaggaacttgcatccttccgtgggcatcga
aaggatgtgaccgctttggcttggcatccgtttcatgaagaatattttgtcagtgggagt
tctgatggatccatttaccattggcttgttgggcatgaaactccccaggttgaaattcct
aatgcacatgatcacagtgtgtgggatcttgcgtggcatcctattggttaccttctctgc
agtggtagcaatgatcacactacgaggttttggtgcagaaataggccaggagacactggt
cgggataaatttaaccccggccaaaatcaaggttatggtgagcaaaaccctgcttttggt
ggtcgcatgactggtaattttccagtacctgaaggaccaccaactcctggaccacttgtt
cctgggttgactcgaaatgaaggaactattccaggtgttggagttgctatgccattctct
cttgatgcatcaaatcagggggagcaacagcaacctcatgcactttcaatgcctttaggt
gctcctcctctcccgcctggtccccacccctctcttcttgctgcgaatcagcagcaacaa
tatcagcaaaatcctcaacagatgccacaacagcaacaccaacaccaaggtcacccgcaa
caaatgccccctatgcctatggcacctccaaatatgccacagctgcagcctccatcccat
ctacccttgctgccgcatcctcatttacatcgaccgccaccccaaatgcccccacttggt
atgccatcttcagggccaggatctttgtctatgccttcatcggttcctacctcacattca
atgccaatgggaattcaaggtacaatgaatcagatgggtcacccattgccacaaggtcat
tttatgggcatgaacccaatgcactcgggatctctacctacaagcggtggaggttttcca
aatggtatgccaaacatgcagggcccaacaaatgcaagtggacctcaaatgtatcctcag
ggtggcaccttcaaccggggtcaacctgggcaaattcccatgcatccgggttataatcct
taccagtctaggggtcaatctggcatgccccaacctccaccagggccaccaccgcacggg
caaacacctcagtag

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