KEGG   Malus domestica (apple): 103438855
Entry
103438855         CDS       T03194                                 
Name
(RefSeq) replication factor C subunit 1
  KO
K10754  replication factor C subunit 1
Organism
mdm  Malus domestica (apple)
Pathway
mdm03030  DNA replication
mdm03410  Base excision repair
mdm03420  Nucleotide excision repair
mdm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103438855
   03410 Base excision repair
    103438855
   03420 Nucleotide excision repair
    103438855
   03430 Mismatch repair
    103438855
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mdm03032]
    103438855
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103438855
DNA replication proteins [BR:mdm03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    103438855
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     103438855
SSDB
Motif
Pfam: RFC1 BRCT AAA RCF1-5-like_lid PTCB-BRCT AAA_30 AAA_22 Rad17 AAA_19 BRCT_2 Gp44_lid AAA_18 nSTAND3 AAA_5 RuvB_N AAA_16 AAA_14 AAA_assoc_2 AAA_24 Zeta_toxin Sigma54_activ_2 AAA_17 AAA_28 DNAX_ATPase_lid
Other DBs
NCBI-GeneID: 103438855
NCBI-ProteinID: XP_008375618
LinkDB
Position
07:complement(join(6743456..6743601,6743716..6743772,6744370..6744616,6744703..6744795,6744907..6744979,6745792..6745916,6746408..6746447,6746536..6746717,6747795..6747885,6749210..6749379,6749851..6749904,6750616..6750823,6751312..6751427,6751577..6751765,6751883..6752049,6753497..6753645,6753728..6753789,6753869..6753944,6754128..6754195,6754291..6754758,6755237..6755332,6755502..6755504))
AA seq 959 aa
MADIRKWFMKSHDKGNTKKPEATVSQKTEPKEPVQGGQENSGRRKTSKYFPTDKPKDEKG
TTEVPAKRKPHKDPDESIKPSPAKKAHKVDVDDDDDFVSSNSKKKSVYATPSKKLKSTSG
TGIPQKVMANDEAGDEDEKVAESSLKPAGRGRGGRGASAVPAGGRGRGAGRGGFMNYGER
KDPPHKGEKEVPEGAPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSVSKKTNYL
LCDEDIEGRKSSKAKELGTAFLTEDGLFGKIRASIGAKVPVQEAKKSVDDAAAASLPSKS
PKKVTLKKDCTGSLLASSASSKQLQSDASLARRKKQTTEHSTFTWTEKYRPKVPNDIVGN
QSLVKQLHDWLSHWNEQFLDTGDKKKGKNPINSGAKKAVLLSGTPGIGKTTSAKLVSQML
GFQAIEVNASDSRGKADSKIEKGIGGSNANSIKELVSNKGLSMDGSKHPKTVLIMDEVDG
MSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLM
QVANAEGLQVNEIALEELAEKVNGDMRMAVNQLQYMSLSMSVIKYDDVRQRLLSSSKDED
ISPFTAVDKLFGFNAGKLRMDERVDLSMSDPDLVPLLIQENYVNYRPSAAVKDDSGIKRL
NLIARAAESIGNGDIFNVQIRKYRQWQLSQSACLSSSIIPAALLRGQRETLEQGERNFNR
FGGWLGKNSTLGKNRRLLEDLHVHLLASRESSSGRETVRVEYLSLLLKRLTVPLRELPKD
EAVQEVVEFMNTYSISQDDFDTIVELSKYQGHPNPLDGIVPAVKAALTKAYKEGSKTRMV
RAADFVTIPGMKKAPKKRIAALLEPSDDAIGENNDDTLVQSEDENSSDTEDLEDSAVGEK
LQKELQSLNTKGVQVQFDLKGAPNTSAKKTPAGRGRGGSAAASVKKGSRGSGAGAKRKR
NT seq 2880 nt   +upstreamnt  +downstreamnt
atggccgatattaggaagtggtttatgaagtcgcacgacaagggaaacaccaaaaaaccg
gaggcgaccgtttcacagaagactgagcctaaagaaccagtgcaaggaggtcaagaaaat
tctggcaggaggaaaactagcaagtatttccccacagataagccaaaagatgaaaaagga
acaactgaagttccagccaaaagaaagcctcacaaggatcctgatgaatctattaaaccc
tcacctgcaaaaaaagctcacaaagttgatgttgacgacgatgacgattttgtctcttcc
aattcgaagaagaaatcagtgtatgccactcctagtaagaaattgaagagcacgtctggc
acaggaatcccacagaaggttatggctaatgatgaagctggcgatgaagatgaaaaggtt
gccgaatcatccctcaagccagctggtcggggtcgtggtggaagaggtgcttcggcagtt
ccagctggtggaagaggcaggggcgctggacgaggcggatttatgaattatggagaaagg
aaagatcctccacacaagggagaaaaggaagttcctgaaggtgctcctaattgtttagct
ggcttgacttttgtaattagtggtacacttgacagtttggaaagagaagaagcagaggat
ttgatcaaacgtcatggcggtcgtattactggatctgtcagcaagaaaacgaactatctt
ttatgtgatgaagatattgagggaaggaaatcctccaaagccaaagaacttggtacggct
tttcttaccgaggatggattgtttggtaagattcgggcgtctattggtgctaaagtacct
gtacaagaagcaaagaaatctgtggatgatgctgcagcagcatctttgcccagtaaaagc
cctaagaaagtaacattgaagaaagattgcaccggaagcttgttggcatcaagtgcatct
agcaaacagttgcagtcagatgcctcccttgctaggcgtaagaagcaaactaccgagcat
tctacttttacttggacagaaaaatataggccaaaggttcctaacgacattgttggtaat
caatcactggtaaagcagcttcatgattggttgtcacattggaatgagcaatttcttgat
actggagataagaaaaaaggaaaaaacccaatcaattctggtgcaaaaaaggctgtactt
ttaagtggaacacctggtatagggaaaacgacgtctgcaaagttagtcagccagatgctt
ggtttccaggcaattgaggtaaatgctagtgacagtcgtgggaaagctgattcaaagatt
gaaaagggaattggtggaagcaatgcaaattcaattaaagagcttgtcagcaacaagggc
ctgagcatggatggatcaaagcatccaaaaactgtgctgattatggatgaggttgatggg
atgtctgctggagatcggggaggagttgctgatcttattgcaagcataaagatttcaaaa
attcctatcatctgcatttgtaatgatcgttacagtcagaaactgaaaagtcttgtgaac
tactgtttgcttctcagctttcgcaaacctaccaagcaacagatggcaaagaggttgatg
caagttgcaaatgctgaaggccttcaagttaatgagattgctcttgaggaacttgcagaa
aaagttaatggagacatgcgaatggcagttaaccaattgcaatatatgagcctctcaatg
tctgtcattaaatatgatgatgtacggcagcgtttattaagcagttcaaaggatgaagat
atttcaccattcacagctgttgacaagctgtttggttttaatgctggaaagctgcgaatg
gatgagcgagttgacctgagcatgagtgatcctgacctagtccctcttctaatccaggaa
aattatgtcaactataggccaagtgcggctgttaaagatgatagtgggattaaacgtctg
aacttgattgcccgtgccgctgagtctattggcaatggagatattttcaatgtacagatt
aggaaatatcggcagtggcagctttcccaaagtgcttgtctttcatcctctataattcct
gctgcattgttgcgggggcaaagagagacacttgagcagggagaaaggaattttaataga
tttggagggtggctgggaaagaactcaacattaggaaagaatcgtaggctcttggaagat
ttgcatgtccatcttcttgcttctcgtgaatctagttcggggagggaaacagtgcgagtt
gaatacctttctcttcttctgaaacgattgactgtgcctctccgtgaactgcctaaggat
gaagcagtgcaggaagttgtggagttcatgaatacttactccattagtcaggatgacttt
gatactattgtggagttatccaaatatcaggggcatccaaatccgctagatggcatagtg
cctgctgtaaaagcagctctgacaaaagcatacaaagaaggaagcaaaacaaggatggta
cgagctgcagattttgtcactattcctggaatgaaaaaggcccctaagaagcggattgct
gctcttttagaaccatctgatgatgcaattggagagaacaatgatgatactttggttcag
agtgaagatgagaattcgtcagatacagaggacttggaagattctgctgttggtgagaag
ctgcaaaaggaactgcaaagcttgaacacaaaaggagtgcaagtacaattcgatttgaag
ggtgcgcctaatacaagtgcaaagaagacaccagctggcagaggtagaggtggttctgct
gctgccagcgtgaaaaagggcagccgaggttccggagctggtgccaagagaaagagatga

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