Malus domestica (apple): 103439637
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Entry
103439637 CDS
T03194
Name
(RefSeq) E3 ubiquitin protein ligase RIN2 isoform X2
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
103439637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mdm04121
]
103439637
Enzymes [BR:
mdm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
103439637
Ubiquitin system [BR:
mdm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103439637
Multi subunit type E3
ERAD complex
103439637
LMBR1L-GP78-UBAC2 complex
103439637
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-C3HC4
CUE
zf-rbx1
zf-RING_UBOX
zf-ANAPC11
zf-RING_11
zf-C3HC4_2
E3_UbLigase_EDD
zf-C3HC4_3
zf-RING_5
zf-RING_16
zf-RING_Vps41
zf-C3HC4_4
U-box_ZFPL1
FAR1_N
zf-HC5HC2H
Endonuclease_7
zf_RING_Vps8_fungal
PHD
Motif
Other DBs
NCBI-GeneID:
103439637
NCBI-ProteinID:
XP_008376431
LinkDB
All DBs
Position
07:join(32465441..32465680,32466040..32466117,32466293..32466379,32466478..32466599,32467033..32467129,32467233..32467338,32467523..32467680,32467791..32467928,32468010..32468077,32468184..32468414,32469052..32469433,32469525..32469581)
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AA seq
587 aa
AA seq
DB search
MGLRYIAISAACTAISFAGLQLWTETSLVKLKSDGLIAENLINAANFGHVFDLLLGSYTT
VGLLANFVLNAFILLVLCLKTIFFVELYSSETHKLIERLINYVIYKGTFLPLVIPPTIYH
AGLWSVWLIVLCSLKMFQALARDRLERLNASPSATPLTYFRVYSVLLLVLTVDIFWIRLC
VVIYKTLGLSMFLLLLFEPFSIAFETLQAILVHGFQLLDIWIHHSAWNSSNCESSKLFDT
SAVGLLLEWKGGLTRNLSFVLDMATLLMALGHYVHIWWFHGMAFHLVDAILFLNIRALLS
SIVKRIKGFIKLKKALGALHAALPDATSEELRAYDDECAICREPMAKAKRLHCSHLFHLA
CLRSWLDQGLNEIYSCPTCRKPLFVGRPENEVHPRSEETSSDEQLARQISLGLGRQNTPG
HAIPAGVFPNQTQNPAEGDPWRGTGLDSDWLHTWSSQGVDGAGPSTAVGSVGLGRVQMMM
RRLASVGETYAHTALEDGAWSLWPMNAPQVAATGPPIPPADDGRYQGGARNLHMRTPART
VNDNLANILAMAETVREVLPHMSDDLIFQDLQRTNSVTVTVNNLLQM
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgaggtatatagccatctccgctgcatgtacagcgataagctttgcaggcctc
cagttgtggacggaaacttctttagttaaactaaaatcggatggactaattgcggagaat
ttgattaatgctgccaattttggccatgtatttgatctgcttttgggttcttatactacc
gttggactgctggcaaattttgtactcaatgcatttattttactcgttttatgtctcaag
actatattctttgtggagttgtattcttctgaaactcacaaattaatcgaacgccttatc
aattatgttatttacaagggcacttttctacccctggtcattcctcctacaatatatcat
gcgggcctgtggtcagtctggttgattgttctttgttctttaaagatgtttcaagctttg
gctcgagatcgacttgaacggttgaatgcatccccttctgccacaccattgacatatttt
cgtgtgtattcagtgttattgctggtgctgactgttgatattttctggataaggctgtgt
gtggtgatatataaaacactgggtttatctatgtttctcttgttattatttgagcctttc
agtattgcatttgagacattgcaggctattttggtgcatggatttcagttacttgatata
tggatccatcattcagcatggaacagttcaaattgcgagagttccaaattatttgataca
tcagcagttggtttattgttggaatggaaaggcggtcttactcggaatttgagctttgtt
cttgatatggccacattgttaatggcccttggtcactacgtgcatatttggtggtttcat
ggcatggcattccatctggtggatgcaatcctttttctaaacatacgtgccttgctaagt
tcaattgtaaaacgtataaaagggttcatcaaactgaagaaagccttaggtgctcttcat
gcagcacttccagatgcaacatctgaagaactacgggcatatgatgatgaatgtgcaatt
tgtagggaacctatggctaaggccaaaagactacactgcagtcacctttttcatcttgca
tgcttgagatcttggttggatcaaggtttgaatgagatctattcatgtccgacttgtcgc
aagccactttttgtaggtagacctgaaaatgaagtacatccccgcagtgaagaaacttcg
agtgatgagcagcttgctcgtcaaataagtttaggacttggtcgacaaaatactcctgga
catgcaatacctgctggtgtgtttcccaatcagactcagaaccctgcggaaggcgatcca
tggagaggtaccggactggattcagattggttgcatacttggtcaagccagggagttgac
ggggcaggtccttctacggctgtaggatctgttggactggggagagttcagatgatgatg
aggcgtcttgcatctgtaggggagacgtatgcgcacacggcccttgaagatggtgcgtgg
agcctctggcctatgaatgcccctcaggttgctgcaactggtccaccgattcctcctgca
gacgatggaagataccaaggaggagcacggaatttacatatgaggacccccgcacgtact
gtgaatgacaacctagcaaacatacttgctatggctgagacggtgagggaagttctgcct
catatgtcagatgacctaattttccaggatttgcagcgaacaaattcagttaccgttact
gtgaataatcttctccaaatgtga
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