KEGG   Malus domestica (apple): 103439741
Entry
103439741         CDS       T03194                                 
Name
(RefSeq) DNA mismatch repair protein MSH3 isoform X1
  KO
K08736  DNA mismatch repair protein MSH3
Organism
mdm  Malus domestica (apple)
Pathway
mdm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    103439741
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103439741
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     103439741
SSDB
Motif
Pfam: MutS_V MutS_III MutS_I MutS_II MutS_IV
Other DBs
NCBI-GeneID: 103439741
NCBI-ProteinID: XP_008376561
LinkDB
Position
07:complement(join(33872892..33872895,33872990..33873315,33873433..33873906,33874105..33874254,33874889..33874960,33875063..33875323,33875426..33875557,33875658..33875909,33876082..33876333,33876422..33876520,33877430..33877594,33877697..33877888,33878125..33879114))
AA seq 1122 aa
MGKQKQQVISRFFAPKPKTPDPSSPSSSSFPPSSPPSNPKDPPTPPPKITATVAFSPAKR
ALISSHLAVSSSPKPAKLPKLSPHTHNPIPAAANPSLHQKFLQKLLEPASDVPEPPPSSN
QPAKFTPLEQQVVELKKRHPDVLLMVEVGYKYRFFGEDAEIAARVLGIYAHMDHNFLTAS
VPTFRLNVHVRRLVGAGYKVGVVKQTETAAIKAHGSNRAGPFDRGLSALYTKATLEAAED
VGGKEEGCGGDSNYLACVVDKSVSVENVDGGVESGVEVKIGIVAVEVSTGDVVYGEFDDN
FMRSGLEAVVLSLSPAELLLGEPLSKQTDKMLLAFSGPASNVRVERVSRDCFKDSGAFAE
VMSLYENMEGGDLTDHSKVNTDVKEQSNKHLGIEGFMNMPNMAVQALALTIYHLKQFGLQ
RILRLGASFRPLSSSMEMTLSANALQQLEVLKNNADGSESGSLLQSMNHTLTIFGSRLLR
HWVSHPLCDRTMISARLDAVSEIAESMGSSISPHNIEQLDVEDSFATNVNPELTYILSSV
LTTLGRSPDIQRGITRIFHRTATPPEFIAVIQAILYAGKQLQQLQIKEEGSKGNTRGKSV
RSELLRKLILTASSSTVVGKAAKLLSALNKEAADKQDLLNLIISDGQFPEVAKARKEVQL
ANEKLDSLISLYRKQLGMRKLEFLSVSGTTHLIELTLDVKVPSNWVKINSTKKTVRYHPP
EVLTALDHLALASEQLTVVCRAAWDSFLSGFGKYYAEFQAAVQALASLDCLHSLAVLSRN
KNYVRPMFVYDDEPVQIHISSGRHPVLETILQDNFVPNDTDLEADGEYCQIITGPNMGGK
SCYIRQVALIAIMAQVGSFVPASSAKLHVLDSIFTRMGASDSIHQGRSTFLEELSEASHI
LHNCTSRSLVIIDELGRGTSTHDGVAIAYATLNHLLQQKRCMVLFVTHYPKIAHIRTEFP
GLVEAYHVSYLTSNRDMGSTGIQSENQDVTYLYKLVPGVSERSFGFKVAELAQLPSSCIR
RATVMAARLEAVVSSRTRNKDDKKWLLKSLPTEQKQEEQDVMLESPECLRVGWSSILGDI
DGALYEKFFKNLKTTLLDDSDPIKSVENLNHTRSIARELVSR
NT seq 3369 nt   +upstreamnt  +downstreamnt
atgggaaagcaaaagcagcaagttatttcccgcttcttcgctcccaaacccaaaacccca
gacccctcatctccttcctcctcctcatttcctccctcatcgccgccgtcaaaccctaaa
gacccacccaccccacctcccaaaatcacagccacagtcgccttctctcccgccaaacgc
gccctcatctcctcccacctcgccgtctcttcctctcccaaaccagccaaactccccaaa
ctctctcctcacacccacaaccccatacccgccgcagccaatccctccctccaccaaaaa
ttcctccagaagcttctagaacccgcctccgacgttccagaacctcccccttcctccaac
caacccgccaagttcacgcctttggagcagcaggtggtggaattgaagaagcgccacccg
gatgttcttctgatggtggaagtcggttacaagtaccggtttttcggcgaagacgccgaa
attgctgcgagggttttggggatttatgcccacatggatcacaatttcttgaccgcaagt
gtcccaaccttccggttgaatgtccacgtcaggaggctggtgggtgccgggtataaggtc
ggcgtggtgaagcagaccgaaaccgccgccattaaggcacatgggtcgaaccgagccggt
ccatttgaccgtggattgtcggcattgtacacgaaggcgactctggaggcggcggaggat
gtggggggaaaagaggagggctgtggtggggatagtaattatttggcttgtgttgtggac
aagagcgtttcagtggaaaatgtggatggtggagttgagagcggtgtggaagtgaaaatt
ggaattgtggcagtggaggtttcgacgggcgacgttgtctatggagagtttgatgataat
tttatgaggagtgggcttgaggctgtggttttgagcttgtcacctgctgagttgcttctt
ggggagccactctccaaacaaacagataagatgttacttgctttttctggaccggcttca
aatgtccgcgtggagcgtgtctcacgagattgcttcaaggacagtggtgctttcgctgaa
gtaatgtctttatatgaaaacatggagggtggtgatttaacagatcattcaaaggtaaat
acagatgtgaaagaacagagtaataagcacttgggaattgagggattcatgaacatgcca
aatatggcagtccaagcattggccctgactatttatcatctgaaacaatttggtttgcaa
aggatcctgcgcctaggagcttcttttaggcccctctcaagcagcatggagatgactctc
tcggccaatgcacttcagcaattggaggtattgaagaacaatgctgatggatccgagtct
ggctccttgctgcagtctatgaatcatactcttaccatatttggttcaaggcttcttaga
cactgggtatctcaccctttatgtgatcgaaccatgatttctgctcgtctagatgctgtt
tctgagattgcagaatctatggggtcttctatatctcctcacaatattgaacagctagat
gtggaagattcgtttgcaacaaatgtgaacccagagctgacttatatactttcttcagtt
ctgacgactttgggacggtcgcctgatattcaacgtgggataacaagaatctttcatcgg
actgccactccacctgagttcattgcagttattcaagctattttatatgctggaaaacaa
cttcaacaacttcaaattaaagaagagggaagcaaaggaaatacgaggggaaaaagtgta
cgctctgagttgttgaggaagttgatattgactgcttcgtcgtccactgtagttggaaaa
gctgcaaaattgttgtctgccctcaacaaggaagcagctgacaaacaggatctactaaac
ctaatcatctctgatggccaatttcctgaggttgctaaagcaaggaaggaggttcaattg
gcaaatgagaaattggattctctcatcagtttgtaccggaaacagcttggaatgcgcaag
ttggaattccttagcgtgtctggaacaacacacttgatagagttgaccttagatgtaaag
gtgccctcaaattgggttaagattaatagtaccaaaaagacagtccggtatcacccacct
gaagtcctgactgctttagaccatctagctcttgcaagtgagcaactcactgttgtttgt
cgtgctgcttgggatagctttctaagtggttttggtaaatattatgctgagttccaagct
gctgttcaagcactagccagtttagactgtcttcattcacttgctgtcctttcaagaaat
aagaactatgttcgtccaatgtttgtatatgatgatgaaccggtccagatacacatctcc
tctggtcgtcatccggttttggagactatattacaagacaattttgttcccaatgataca
gatttggaggcagatggggagtattgtcagattattactggacccaatatgggtggaaag
agttgctacattcgccaagttgctctcattgctatcatggctcaggttggttcctttgtt
ccagcatcatcggcaaaactgcatgtgctggacagcattttcactcgaatgggtgcttct
gacagtattcaccaagggagaagcacctttcttgaagaactgagcgaggcttcacatata
cttcacaattgtacatcacgctcattggttatcattgatgagcttgggagaggcacgagc
acacacgatggtgtggctattgcttatgctacattaaatcatctactacagcagaaaaga
tgcatggtcctatttgtcacgcactacccaaaaattgctcatatcagaactgaattccca
ggcttagtggaggcgtaccatgtttcttatctgacgtcaaatagagatatgggttcgaca
ggcattcaatccgaaaatcaagatgtcacttacttatataagcttgtgcctggtgtttca
gagaggagtttcggatttaaggttgcagagcttgcacagctaccttcctcatgcatcaga
cgagcgactgtcatggctgctaggttggaggcagtagtaagcagccgaacaagaaataag
gatgacaaaaagtggttgctaaaatcactgccaacagaacaaaagcaggaagagcaagat
gtgatgctggaatctcccgagtgccttcgtgtgggatggagctcgattttaggggacata
gatggtgccctgtacgagaaattctttaagaatttgaaaaccacattacttgatgacagc
gaccccataaaaagcgttgagaacttgaatcacacaagaagtattgcaagagaattagta
agcagatag

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