KEGG T03194: 103439774

Malus domestica (apple): 103439774

Entry

103439774         CDS       T03194

Name

(RefSeq) cleavage and polyadenylation specificity factor subunit 2 isoform X1

K14402

cleavage and polyadenylation specificity factor subunit 2

Organism

mdm Malus domestica (apple)

Pathway

mdm03015

mRNA surveillance pathway

Brite

KEGG Orthology (KO) [BR:mdm00001]
09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    103439774
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103439774
Messenger RNA biogenesis [BR:mdm03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     103439774
    U7-dependent histone pre-mRNA processing factors
     103439774

SSDB

Motif

Pfam:

Lactamase_B_6 CPSF100_C Beta-Casp RMMBL Lactamase_B Lactamase_B_2 Anti-Pycsar_Apyc1 MBL_MAP1B

Other DBs

NCBI-GeneID:

103439774

NCBI-ProteinID:

XP_008376608

LinkDB

Position

07:join(34239989..34240137,34240224..34240392,34240504..34240600,34240708..34240834,34240952..34241067,34241233..34241327,34241434..34241585,34241698..34241755,34241839..34241946,34242068..34242320,34242477..34242661,34243099..34243191,34243283..34243381,34243517..34243648,34243739..34243783,34243871..34244038,34244206..34244280,34244412..34244513)

AA seq 740 aa
MGTSVQVTPLCGVYNENPLSYLVSIDGFNLLIDCGWNDHFDPSLLQPLSRVASTVDAVLL
SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQFLSRKQVSDFDLFTLDDID
SAFQNFTRLTYAQNHHLSGKGEGIVISPHVSGHLLGGTVWKITKDGEDVIYAVDFNHRKE
KHLNGINQSAFVRPAVLITDAYNALNNQPYRRQKDKEFTDAIKKTLRSDGNVLLPVDTAG
RVMELVQILESCWTEENLNYPIFFLTYVASSTIDYVKSFLEWMSDAIAKSFEKTRENVFN
LKRIRLLVSKSELDDAPDGPKVVLASMASLEAGFSHDIFVEWANDPKNLVLFTERAQFGS
LARMLQADPPPKAVKVTISKRVPLVGEELIAYEEEQNRIRKEEALKASLVKEEESKASHG
ADVNTSDPMIIDASNTHSLPDAAGPQGSGYRDILIDGFTPPSTSVAPMFPFYENSTEWDD
FGEVINPDDYVIKDEDMDHGAMHVGGDMDGKLDEGSASLILDTRPSKVVSTELTVQVKCS
LIYMDFEGRSDARSIKSILSHMAPLKLVLVHGTAEATEHLKQHCLKHVCPHVYAPQIEET
IDVTSDLCAYKVQLSEKLMSNVLFKKVGDYEIAWVDSEAGKTENDMLSLQPLSNPPPPHE
SVLVGDLKMANFKQFLSDKGVQAEFAGGVLRCGEYVTLRKVGDASHKGGGSGTQQIVIEG
PLCEDYYKIREYLYSQFYLL

NT seq 2223 nt +upstreamnt +downstreamnt
atgggaacttcagttcaggtaacgccgttgtgcggcgtctacaacgagaacccgctgtcg
tatttggtctcaatcgacggcttcaacctcctcatcgactgcggctggaacgaccacttc
gacccctccctccttcaacccctctccagggtagcttcgacggtggatgcagtgttgttg
tcgcatccagatacacttcacctcggcgcgcttccgtacgccatgaagcagctcggcctc
tctgcgcccgtcttctccaccgagccggtttacagattaggtctcctcactatgtatgat
cagttcctctctcgcaagcaagtatcagactttgacctttttacactggatgacattgat
tctgcattccaaaatttcaccagattaacctatgctcaaaatcaccatctttctggcaaa
ggagagggaattgtgatttcaccccatgtgtctgggcatctcttgggcggtaccgtctgg
aagataacaaaggatggggaggatgttatatatgctgtggacttcaaccatcgaaaagag
aagcatttgaacggaattaatcaatcagccttcgtacgccctgctgttctgataacagat
gcctataatgctttgaacaatcagccttatagacgccaaaaggacaaggaatttacagat
gctataaagaagactctacgatctgatggaaatgtgctattacctgttgatactgccggc
cgggttatggaacttgtccagatattggaatcgtgttggacagaggaaaatttgaactat
cccatcttctttctaacatacgttgcgtctagcacaatcgattacgtaaaaagtttcctt
gagtggatgagtgatgcgatagcaaagtcctttgagaaaacacgtgagaatgtttttaat
ttgaagcgaatcagacttctagttagcaagagtgaacttgacgatgctcctgacggtccc
aaggttgttttagcatccatggccagtttagaagctggtttctctcacgatatatttgta
gaatgggcaaatgaccccaagaatcttgtcctttttacagaacgagcccagtttggaagt
ttagctcgcatgcttcaggcagatccgcctccaaaagctgttaaggttaccatatccaaa
agggtccctttggttggtgaggagctaattgcttatgaagaagagcagaacagaataaga
aaggaagaagctctaaaggctagtcttgtaaaagaggaggaatcaaaagcttctcatggg
gctgatgtcaacacgagtgatccaatgatcattgatgctagtaatacacattctttgccg
gatgcagcaggtccacaaggcagtggataccgggacattttaatagatggatttactcct
ccttctaccagtgttgcccctatgtttcccttctatgagaatagtaccgagtgggatgac
tttggtgaagttataaatccggatgattatgtcataaaggatgaagacatggaccatgga
gctatgcatgttggtggtgatatggatggaaaacttgatgaaggctctgctagtttgata
cttgacacgaggccttcaaaagttgtatcgactgaattgaccgttcaagtgaagtgttca
ttgatttatatggactttgagggccgttccgatgcaagatccatcaaatcaattctttcc
catatggctcctctaaaacttgttttggttcatggaacagctgaggccacggaacatttg
aagcaacactgcttgaaacacgtttgtccgcatgtttatgctcctcaaattgaagaaaca
attgatgttacttctgatttatgcgcttataaggtgcaattgtctgagaagttaatgagt
aacgtgctctttaaaaaggttggagattacgaaatagcatgggttgactctgaggcagga
aagacagaaaatgatatgctatctttacaacccctctcaaacccacctccaccacatgaa
tctgtccttgttggtgacttaaaaatggctaatttcaagcaatttctttccgacaaaggt
gttcaggctgaatttgctggtggcgtgctgagatgcggtgaatatgtgacactacgcaaa
gttggggatgcaagccataagggtggtggttccggcacccaacaaattgtgatcgaaggc
cccttatgtgaggattattacaagattcgggagtatctctactcacaattttatttgctt
taa

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