KEGG   Malus domestica (apple): 103440027
Entry
103440027         CDS       T03194                                 
Name
(RefSeq) protein TORMOZ EMBRYO DEFECTIVE
  KO
K14555  U3 small nucleolar RNA-associated protein 13
Organism
mdm  Malus domestica (apple)
Pathway
mdm03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    103440027
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:mdm03009]
    103440027
Ribosome biogenesis [BR:mdm03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    103440027
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40 WD40_Prp19 Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_WDHD1_1st WD40_Gbeta Beta-prop_EML_2 WD40_MABP1-WDR62_2nd EIF3I Utp13 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_EIPR1 Beta-prop_WDR41 Beta-prop_SPT8 Beta-prop_IFT122_1st NBCH_WD40 ANAPC4_WD40 Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_Nup120_160 Beta-prop_DCAF12 WD_LRWD1 PEP5_VPS11_N Beta-prop_NWD2_C Beta-prop_WDR35_TULP_N WD40_RFWD3 Beta-prop_Vps41 Ge1_WD40 Cytochrom_D1 WDR54 Beta-prop_VPS8 PROPPIN Beta-prop_ACSF4 Tricorn_2nd Nbas_N WD40_like RAB3GAP2_N Beta-prop_NOL10_N
Other DBs
NCBI-GeneID: 103440027
NCBI-ProteinID: XP_008376928
UniProt: A0A498JNF2
LinkDB
Position
07:join(36680654..36680950,36681071..36681253,36681383..36681532,36682008..36682222,36682373..36682658,36683199..36683333,36683512..36683630,36683829..36683985,36684133..36684379,36684465..36684541,36684931..36685050,36685378..36685508,36685603..36685777,36685891..36686214)
AA seq 871 aa
MASLPLKKNYRCVPSLQQFYSGGPFAVSSDGSFIACKCGESIKIVDSSNASIRSTIEGDS
DEVTALALSPDNRLLFSAGHSRQIRIWDLSTLKCVRSWKGHEGPVMGMSCHPSGGLLATA
GADRKVLVWDVDGSFCTHYFKGHKGVVSSVLFHPDPTKQLLFSASDDTNVHVWDLLTKKC
VATLNAHNSTVTSMALSEDGWTLLTAGRDKVVILWDLHDYICMKTVTTYEVLEAVCAIPS
GTPLSSYLGSCKKQSGKKSGLPEICFITVGDRGIVRIWNSEGAVCLYEQKSSDVTLSSDV
DQSNRGFTAAVMLPSDKGLLCVTADQEFLLYSPIKLPEGTLEFELSKRLVGYNDEIVDMK
FVGDEEQFLAVATNLEQVRVYDIASMSCSYVLAGHTGIVLCLDTCVSSCGKPLIATGSKD
NTVRLWDSESKCCLGLGIGHMGGIGAIAFSKKRKDFFVSGSSDRTLKVWSLDGLSDNAEK
PVNLKAKAGVAAHDKDINSVAVAPNDSLVCSGSQDRTACVWRLPDLVPVVVLKGHKRGVW
SVEFSPVDQCVITASGDKTIKIWAISDGSCLKTFEGHTSSVLRASFLTRGTQFISSGADG
LVKLWMVKTDECIATYDQHDDKVYALAVGKKTEMLATGSSDAVINMWYDCTASDKEEAFR
KEEEGVLKNQELENAVLDADFSKAIQVAFELRRPHKLYQCFSEIWRKRETEQQMEKALLA
LGEEEIRLLFEYVREWNTKPKLCHVAHYVLFKVFNILSPTKINEIKGIGEILEGLLSYSQ
RHFSRMDRHETNTYLVNYTLTGMSVIEPETDTRVLQDKSLMHSAADDENGTLINVPEDEE
RKTSEWLKETAATKKRKSKKSKDGSSKKVKA
NT seq 2616 nt   +upstreamnt  +downstreamnt
atggcgtctctacctctgaagaagaactaccggtgcgtgccatctctgcagcagttctac
tccggcggtcccttcgccgtctcatccgacggctcattcatcgcctgcaagtgcggcgaa
tccattaagatcgtggattcatcgaacgcctcgattcggtctaccattgaaggcgactca
gatgaagttaccgctttggccctcagccccgacaataggctgctcttctccgccggtcac
agtcgccaaattaggatttgggacctctccaccttgaagtgcgtgcgttcttggaagggt
catgaggggccagtgatgggaatgtcttgtcacccgtctggtggattgcttgcgactgcc
ggagctgataggaaggttcttgtttgggatgttgatggcagcttttgcactcattacttt
aaaggccacaaaggggttgtttctagtgttctcttccatcctgatcctactaaacaactt
cttttctctgcaagcgatgatacaaatgtgcatgtttgggacctattaaccaagaagtgc
gttgcgacgcttaatgcgcataactcaacagtaacttctatggcactgtctgaagacgga
tggactttgctcacagctggaagagataaggttgtaatcttgtgggaccttcatgactat
atctgcatgaagactgtaacaacatatgaggttcttgaagctgtgtgtgcaatcccttct
ggaactccattatcatcctatttgggttcctgcaagaagcaaagtgggaagaaaagtgga
ttacctgaaatttgttttataacagttggtgaccgtgggattgtacggatttggaattct
gaaggtgcagtttgcctatatgagcaaaagtcctcagatgttactctatcttcagatgtg
gatcaatcaaataggggtttcaccgcagctgtcatgcttccttcagataaagggttgctt
tgtgtgactgctgaccaggagttccttttatattccccaattaagttgccagaggggacg
ctggaatttgaattgagcaaaagacttgtaggttacaacgatgagattgtggatatgaag
tttgtaggagatgaggaacaatttcttgctgttgccacaaatcttgaacaggtacgagta
tatgacattgcatccatgtcatgttcgtatgtattggcaggtcataccggaattgttcta
tgccttgacacctgtgtatcaagttgtggaaaaccacttattgcgaccggaagcaaagac
aacactgttcggttgtgggattcagaaagcaaatgttgccttggtcttggcataggtcat
atgggaggtattggagctattgctttctcaaaaaagcggaaagacttcttcgttagtggt
agtagtgatcgtaccctcaaggtgtggagtttggatggtctttcagacaatgcggaaaaa
ccagtgaatctgaaagcaaaggccggtgtagcagcccatgataaggatattaattcagta
gctgttgcaccaaatgatagtttagtttgtagcggctcccaggatcgcactgcttgtgta
tggaggcttccggatcttgtaccagtagttgtacttaagggtcataaaaggggagtttgg
tctgtagagttctctccagttgatcaatgtgttataacggcttctggtgataaaacaata
aagatatgggccatatctgatggttcatgcttgaaaacatttgaagggcatacgtcaagt
gtattaagagcatcatttcttactcgtggaacccaatttatttcttcaggtgctgatggg
ttggtaaaactatggatggtcaaaaccgatgaatgcattgctacgtatgatcagcatgat
gacaaggtttatgccttggctgtcggaaaaaagacagaaatgcttgcaactggcagcagc
gatgctgtcatcaatatgtggtatgattgtactgcttctgataaagaggaagcttttcgt
aaggaggaggaaggtgttttaaagaatcaagaactagaaaatgctgtattagatgctgac
ttttctaaagcaattcaagttgcatttgagcttcgcaggcctcataagctttatcagtgc
ttttctgaaatctggaggaagagagaaactgaacagcagatggagaaagcccttcttgcc
ctcggcgaggaagagatcaggctactatttgaatatgttcgagaatggaatacaaagcca
aagctctgtcatgttgcacactatgtgcttttcaaagtcttcaacatcctcagtccaaca
aagattaatgagataaaaggcattggggaaatccttgaaggtctcctctcgtattctcag
aggcattttagcagaatggacaggcacgaaacaaacacgtatttggtgaactacactctg
actggaatgtcagtcattgaaccagagacagatacaagagtattgcaggacaagtctttg
atgcactccgctgcggacgatgagaatgggacgttaataaacgtacctgaagatgaggag
cgaaagacctctgagtggttgaaagaaacggcagctacgaaaaaacggaagtcaaagaaa
tcgaaagatggttccagtaagaaagttaaggcatag

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