Malus domestica (apple): 103440189
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Entry
103440189 CDS
T03194
Name
(RefSeq) small nuclear ribonucleoprotein SmD3b
KO
K11088
small nuclear ribonucleoprotein D3
Organism
mdm
Malus domestica (apple)
Pathway
mdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103440189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103440189
03041 Spliceosome [BR:
mdm03041
]
103440189
03032 DNA replication proteins [BR:
mdm03032
]
103440189
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
103440189
Spliceosome [BR:
mdm03041
]
Complex A
U1 snRNP components
Sm proteins
103440189
U2 snRNP components
103440189
Complex B
U1 snRNP components
103440189
U4/U6.U5 tri-snRNP components
103440189
Complex C
U2 snRNP components
103440189
DNA replication proteins [BR:
mdm03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
103440189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF6897
Motif
Other DBs
NCBI-GeneID:
103440189
NCBI-ProteinID:
XP_008377079
LinkDB
All DBs
Position
08:complement(join(212290..212349,212694..212750,212839..212905,213022..213074,213812..213970))
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AA seq
131 aa
AA seq
DB search
MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL
EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVSRGRAVSMRAKAQAAGRGT
AGRGVVPPVRR
NT seq
396 nt
NT seq
+upstream
nt +downstream
nt
atgagcagaagtttgggaattccggtgaagcttcttcacgaggcgtcagggcacgtggtg
acggtggagctcaagagcggtgagctttacagaggaagcatggtcgagtgcgaggacaac
tggaactgtcagctcgagaacatcacctacaccgccaaggacggaaaagtttcacagctt
gagcacgtatttatccgagggagcaaagtaaggtttatggtcatacctgacatgctaaag
aatgctccaatgttcaagcgcctggatgctagaatcaagggcaagggtgcttcactagga
gtcagcagaggtagagctgtttcaatgcgagctaaggctcaagctgctggccgtgggaca
gccggtaggggtgttgtaccacctgttcgaaggtaa
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