Malus domestica (apple): 103440670
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Entry
103440670 CDS
T03194
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
mdm
Malus domestica (apple)
Pathway
mdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103440670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mdm03041
]
103440670
Spliceosome [BR:
mdm03041
]
Complex B
Other components
Prp19-related factors
103440670
Complex C
103440670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH_3
zf-CCCH
RRM_3
zf-CCCH_10
RRM_YTH1
zf-CCCH_4
RRM_occluded
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
103440670
NCBI-ProteinID:
XP_008377582
LinkDB
All DBs
Position
07:complement(join(25642540..25643437,25643926..25644149,25644260..25644634))
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AA seq
498 aa
AA seq
DB search
MAHRLLRNVEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR
DARFKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALAISSDDAIPKSDVNREFFAE
EHDRKARAGIDYESSYGKARPSDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYR
HEMPITGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPEDGSIRTLYVGGLDARIS
EQDLRDQFYAHGEIESVRMVLQRACAFVTYTTREGAEKAAEELSNKLVVKGLRLKLMWGR
PQAPKQESEGMVEARQQAVAHSGLLPRAVISQQQNQSQDPAAPVHYYNMPPPPSQERSFY
PSMDPQRMGALIPSKEGAPSGATGSGERSSASERQQHGQHYAFQNMAQPHNQYRQQFYPP
PYGYMPPPAPQYQQHPLQYNSAVPPPPSLPMNQQYQNSATPGPAPSGSTSSGSAPSSSGP
SESTPSGSGSAPTGSSAQ
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggcacacaggttgcttaggaatgtggaggcggatggttgggaacgatcagattttccc
atcatctgtgagtcatgcttgggcgacaatccctacgtacggatgacacgagctgattat
gacaaggagtgcaagatttgcacgcgtccgttcacagttttcaggtggaggcctggtcgt
gatgcgcgatttaagaagtcggagatttgccagacatgcagtaagttgaaaaacgtttgt
caagtttgcctcttggatctggaatacggtttgccagttcaggttcgagatactgctcta
gccatcagttctgatgatgccattccaaagagtgatgtaaatagggagtttttcgccgag
gagcacgaccgtaaggctagagctggtatagattacgaatcttcatatggaaaggcacgg
cccagtgacactattctgaagcttcaaagaacaacgccctattacaaaaggaacagagca
catgtctgcagtttttacattcgtggtgagtgcacaagaggtgctgagtgcccttacaga
cacgagatgcccataaccggggagttgtcgcagcaaaacatcaaagatcgttactatgga
gtcaatgatccagtggcaatgaagcttcttaacaaagctggagagatgccctccttggaa
cctcctgaggatggaagcataagaaccttatatgtgggtgggcttgatgcgagaatttct
gagcaggatttgagggatcagttttatgctcatggtgaaatagaatctgttaggatggta
cttcaacgagcatgtgcgtttgtaacctacacaacaagagaaggtgcagaaaaggctgca
gaagaactctctaacaaactggtagtaaagggtttgaggttaaagttaatgtggggtagg
ccccaagcaccaaaacaggaatcagagggcatggttgaagcgaggcagcaggcggtggct
catagtggtttgttgcctcgagcagtcatatctcaacaacagaaccaatcacaagaccca
gctgcgcctgtgcactactacaacatgccgcctccaccttcacaggagagatcattctat
ccgtccatggatcctcaaagaatgggtgcccttattccatccaaggaaggggctcctagt
ggggccacagggtcaggagagcgcagttctgcttcagagaggcagcaacatggtcagcat
tatgcttttcagaacatggctcaaccacataaccaatatcgtcagcagttttatcctcct
ccatatgggtatatgcctccaccagcaccacagtaccagcaacaccctctgcaatataat
tctgcagtgccgccgccaccatccttgccaatgaaccaacagtatcagaattctgcaaca
ccagggccagcaccctcaggttctacgtcctcgggatctgcaccttcaagttctggacct
tcggaatctactccatctggatctgggtctgcaccaacgggttcttcagcgcagtaa
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integrated database retrieval system
