KEGG   Malus domestica (apple): 103440706
Entry
103440706         CDS       T03194                                 
Name
(RefSeq) protein RRC1 isoform X1
  KO
K12842  U2-associated protein SR140
Organism
mdm  Malus domestica (apple)
Pathway
mdm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103440706
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mdm03041]
    103440706
Spliceosome [BR:mdm03041]
 Complex A
  U2 snRNP components
   U2 related factors
    103440706
 Complex B
    103440706
SSDB
Motif
Pfam: Surp RRM_1 CID cwf21 RRM_7 CTK3 SAP
Other DBs
NCBI-GeneID: 103440706
NCBI-ProteinID: XP_028962569
LinkDB
Position
08:complement(join(4102892..4103205,4103398..4103564,4103652..4104451,4109441..4109665,4109821..4109958,4110045..4110129,4110252..4110310,4110492..4110713,4110802..4110882,4111041..4111150,4111419..4111584,4111705..4111824,4112421..4112573,4112645..4112723,4113850..4113895,4114073..4114208,4114320..4114394))
AA seq 991 aa
MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDNAPGSKAFVRGGTIN
PNEKVKPDSEGEKSKDGVSVPKKGSRYVPSFLPPPLASKGKESEKKVSTLIEREEERPRE
KEKGKSRNIDHFMEELKREQEMRERRNQDRENWHDGRQIENSTPSSRFDELPDEFDPSGK
LLGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCG
FVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSEGSTVI
LSGPSGSSGPPVTSVPSQNSELVLTPNVPDITVVPPEDDHLRHVIDTMALYVLDGGCSFE
QAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPP
PLPTVKSPEHEKEAGTTYAAGRSRRVEPERTLTDSQRDEFEDMLRALTLERSQIKDAMGF
ALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEAS
LPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSH
VVPFHSICGEAPEIDKKTTSEDTSDASKTNQDAALAMGKGAAMRELMSLPLAELERRCRH
NGLSLVGGRETMVARLLSLEEAEKQRGYDLDDDLKFAQKHSSSARNSSSRRERNIEPDPV
EMSGWNRNVEDELQSQGKGSLPLAQTFPIPHPELNAFTKKEKSDPILPASKWAREDDDSD
DEQKQARGLGLSYSSSGSENAGDGPSKADETEVATDASIQAQPDSGISEEQRQKLRRLEV
ALIEYRESLEERGIKNLEEIERKVLMYRKRLESEYGLSDSSEYASGSKRTSSERDRRDAD
TRDASRKRHRSGSQGDSPLQRSSNRDRERENDLDRDRERQRDRNRDRPRDFEVDRGRGRD
LDREKSGSRDRDDHERDRSREGDRDRRRRMK
NT seq 2976 nt   +upstreamnt  +downstreamnt
atgagttcgttctcgattacgcggaagaagactccgttccagaagcacagggaggaggaa
gaggcaaagaaaaagagagcggaggatgaaacagctcgcttatatgcggagtttgtggag
tcatttcaaggggataacgcaccggggtcgaaggcctttgttcgtggaggaacaatcaat
cccaatgagaaggtgaagccggattccgaaggtgaaaagtccaaagatggggtatctgtt
ccaaagaaggggagtaggtatgttccatctttcttaccaccacctttggcatccaaaggg
aaagaatccgagaagaaggtcagtaccctgatagagagggaggaggagagaccgagggag
aaagaaaaaggaaagtctcgaaacatagatcattttatggaagagttgaagcgtgagcag
gagatgagggagaggcgaaatcaagaccgtgaaaattggcatgatgggcggcagattgag
aattctacaccatccagtcgctttgatgaacttcctgatgaatttgatccaagtggaaag
cttcttggatcatttgatgatggtgatccacaaactactaatctatacgttggaaatctt
tcgccaaaggttgatgaaaattttcttttgcgaacttttggaagatttgggcctattgct
agtgtgaaaataatgtggcctaggacagaagaggagcgaaggcgccaaagaaattgtggc
tttgtagctttcatgaacagagctgatggacaggcagcgaaagatgaaatgcaaggagtg
gtggtttatgagtatgagttgaagattgggtggggcaagtctgttgctctaccatcacaa
gctctacctgctccccctccaggacatatggccatcaggagtgagggttccactgtaatc
ttgtctggtccatcaggttcatcaggcccgcctgtcacttctgttcctagtcagaattct
gaactggttcttactccaaatgttcctgatataaccgttgttccaccagaggatgatcac
ctccgccatgtgattgatacaatggctttgtatgttctggatggtggatgttcctttgaa
caagctattatggagagaggtagagggaatcctcttttcaacttcttgtttgaacttggc
tcaaaagagcacacctactatgtttggagactctattcatttgctcagggtgatactcta
caaaggtggcgaacagaacctttcattatgattactggtagtggaagatggattccacca
cctctgccaacagtaaaaagcccagaacatgagaaagaggccggtacaacatatgctgca
ggaagaagcaggcgtgtagagccagaaagaacacttactgattcacagagggatgaattt
gaagatatgttacgtgcattaacattagagaggagtcagataaaggatgctatgggattt
gcattggacaatgctgatgcagctggggagatagttgaagttcttacagaatctttgact
cttaaggagacccctatcccaaccaaagtagcaagactcatgcttgtctctgatgtgctt
cacaatagcagtgctccggtaaagaatgcatctgcataccgcaccaaatttgaagcttca
ttaccagacataatggagagctttaatgatttgtatcgtagcataacaggaaggatcact
gctgaggcccttaaggaaagagttctgaaagtattgcaagtatggtcggactggtttctt
ttttcagacgcttacgtgaatggattacgggctacttttcttcggtctgggaactctcat
gtggtcccctttcactccatatgtggtgaagcacctgaaatagacaaaaagaccacttcc
gaagatacaagtgatgctagtaaaaccaatcaagatgctgctttggcaatgggcaaagga
gcagctatgagggagttaatgagtcttcccctagctgagttggaaagacgctgcagacat
aatggattgtctcttgttggtggtcgagaaacaatggttgcacgtttgcttagtcttgaa
gaagcagaaaaacaaaggggctacgacttagatgatgacttgaaatttgctcagaagcat
tcaagttcagctagaaattcaagtagccgcagagaaaggaatattgaaccagacccagtg
gaaatgtctggatggaatcgtaatgtagaggatgagttacagtctcaagggaagggttcc
ctacccttggcccagacctttcccatcccgcatcctgaactaaatgcgtttacaaagaaa
gagaagagtgaccctattctaccagcttctaaatgggcgcgagaggatgatgatagtgat
gacgaacaaaagcaggctcggggtctcgggttaagctactcatcttccggaagtgaaaat
gctggtgatggtcccagtaaagctgatgagacggaggtcgcaactgatgcaagcattcaa
gcacaacctgacagtggaattagtgaggagcagaggcaaaagttgagacgtttggaagtc
gctttgatagaatatcgtgaatctcttgaggagcggggaataaaaaatcttgaagaaatt
gagaggaaggttttaatgtatcggaaacggcttgaatcagaatatgggttatcagattcc
agtgaatatgcttccggaagtaagagaacatcctcagagagggacagacgggatgccgat
actcgtgatgcttcaagaaagcggcaccgcagtggaagccaaggtgatagtccactacaa
agatcatcaaacagagatcgggaaagggaaaatgatttagacagagaccgggaaaggcag
cgggatagaaacagagacagaccccgtgattttgaagttgatagggggaggggccgggac
ctggatcgtgagaagagtggaagtagagacagggatgaccatgagagagatagaagcaga
gaaggagacagggataggaggagaagaatgaaatga

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