KEGG   Malus domestica (apple): 103440738
Entry
103440738         CDS       T03194                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
mdm  Malus domestica (apple)
Pathway
mdm03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    103440738
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mdm03021]
    103440738
   03036 Chromosome and associated proteins [BR:mdm03036]
    103440738
Transcription machinery [BR:mdm03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     103440738
   Coactivators
    SAGA/TFTC/STAGA complex
     103440738
Chromosome and associated proteins [BR:mdm03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     103440738
    STAGA complex
     103440738
    TFTC complex
     103440738
    SAGA complex
     103440738
    SLIK complex
     103440738
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 WD40_Prp19 TFIID_NTD2 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_EML Beta-prop_TEP1_C ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_WDR19_1st Beta-prop_DCAF4 Beta-prop_SPT8 WD40_RFWD3 Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Beta-prop_Nup120_160 Beta-prop_NWD2_C Beta-prop_IP5PC_F WD40_like PALB2_WD40 Cytochrom_D1 Beta-prop_VPS8 LisH
Other DBs
NCBI-GeneID: 103440738
NCBI-ProteinID: XP_070683325
LinkDB
Position
08:join(4375120..4375310,4376064..4376145,4376250..4376328,4376450..4376547,4376643..4376699,4376789..4376876,4376954..4377063,4377418..4377519,4377650..4377801,4378229..4378339,4378422..4378491,4378571..4378610,4378702..4378866,4378984..4379060,4379180..4379296,4379444..4379709,4379792..4379887,4379967..4380042,4380146..4380199)
AA seq 676 aa
MSEAVDDESVRKFVAAYLKKKGFKQAENAFQEELNKNTNSSSSPISFNSQLDPDVAKHIL
SFSQYEEGPAQYQDGYAKLRSWTYSSLDLYRHELLRVLYPVFIHCFMDLVAKGHIQEART
FFNSFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKVNIKICQYSYELLLQFLH
KSQSTTVLGIINEHINFQVSPGQPSSISEDAEAVTLTGSSLDSANQINQKEIHWGLLEDS
FEERLEKAGAFDSEKAEGESKEGDGDENKKKSSEGAKQGASNKKLKKDKASGATAKTARP
EATPVTAVPRVKPELTLPVIPTEVEQSIFEDLRNRVQLSSAALPSVSFYTFINTHNGLNC
SSISHDGSMVAGGFSDSSLKVWDMAKIGQQGLDSALQGENGTTTSSDQVLSNGGKKPYTL
FQGHSGPVYSATFNPLGDFILSSSADSTVRLWSTKLNANLVCYKGHNYPVWDVQFSPVGH
YFASASHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQT
GECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGAIMMWDLSTGRCVTPLMGHTSCVWTLD
FSGEGSLLASGSADCTVKLWDVTASTKLPRTEENKSGNTSRLRSLRTLPTKSTPVYSLRF
SRRNLLFASGVLSKTV
NT seq 2031 nt   +upstreamnt  +downstreamnt
atgtctgaagcggtggacgacgagagcgtgcggaagttcgtggcggcttacttgaagaag
aaaggcttcaagcaggcggagaacgcttttcaagaagaactaaacaagaataccaacagc
tcttcgtccccgatctctttcaattcccaattggaccccgacgtcgccaagcacatcctc
tccttctcccaatacgaggaaggtccagcacagtatcaagatggatatgccaagttgaga
tcatggacttacagttcactagatttgtacaggcatgagttgcttcgtgttctctatcct
gtatttattcattgtttcatggatctggttgctaaaggtcatatacaagaagctcggaca
tttttcaatagcttccgtgaagaccatgaaatgatgcacctacgagatctacagaagttg
gaaggcgttctttctccctctcatttggaggagatggaatttgctcattctcttaggcag
agcaaagtcaacataaagatatgccagtactcgtatgagcttctgctgcagtttctacac
aagtcacaatccaccacagtgcttgggattatcaatgagcatattaacttccaagtttct
cctggacaacccagctcaatttccgaagatgctgaggctgtaacacttaccggaagtagc
ctggattcagctaatcagataaaccagaaggaaatacattgggggttgctcgaagattcc
tttgaagaacgcttggaaaaggctggggccttcgactctgaaaaagcagaaggagaaagc
aaagaaggggatggggatgagaataagaaaaaatcaagtgaaggagctaaacagggggct
tcaaacaaaaagttgaaaaaggacaaggcttctggtgcaacggcgaaaactgcacgccct
gaggctacccctgtaactgcagtaccaagagtcaaaccagagcttactctgccagtaatt
cccacagaggttgaacagtcaatctttgaagacttgagaaaccgtgtgcaattgagtagt
gctgcactgccatctgtcagcttttatacattcatcaacacacacaatggtttaaactgt
tcgtctatatcccatgatggatccatggttgctggtggattttcagactcgtcgctgaag
gtatgggatatggcaaagattgggcaacaaggccttgattcagcgttgcagggtgagaat
ggtaccaccacttcaagtgaccaagttttgtcaaatggtggaaaaaaaccatataccttg
tttcagggtcattcagggccagtttattcagctacattcaatccccttggggattttata
ctctcctcttcagcagactcaactgttcggttgtggagcacaaaattaaatgcaaatctt
gtttgctacaagggtcataattacccagtatgggatgttcagtttagccctgttggtcat
tattttgccagtgcttcacacgatcgaacagcaaggatttggtctatggacagaatacag
cctttgagaataatggctgggcacttatctgatgttgattgtgtgcaatggcatgccaac
tgcaactacattgccactggctctagtgataaaacagttcgattgtgggacgtacaaact
ggagagtgtgtccgaatatttattggtcacagaagtatggttttgtctctggcaatgtca
cctgacggtcgctacatggcatctggtgatgaagacggcgcaatcatgatgtgggacctt
tcaactgggcgatgtgttacacctttgatgggtcacacctcatgcgtatggacacttgat
ttcagtggtgagggttcgcttcttgcttctgggtctgctgattgtacggtaaaactgtgg
gatgttactgcaagtacaaagttgccaagaactgaagaaaacaaaagtggaaataccagc
agactccgatcattgaggactttgccgaccaagtctactcccgtctactcgttacggttt
tctcgaagaaaccttctatttgcttctggggtactttcaaaaactgtataa

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