KEGG   Malus domestica (apple): 103440806
Entry
103440806         CDS       T03194                                 
Name
(RefSeq) WD-40 repeat-containing protein MSI3
  KO
K10752  histone-binding protein RBBP4
Organism
mdm  Malus domestica (apple)
Pathway
mdm03082  ATP-dependent chromatin remodeling
mdm03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    103440806
   03083 Polycomb repressive complex
    103440806
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mdm03036]
    103440806
Chromosome and associated proteins [BR:mdm03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     103440806
  Histone modification proteins
   HAT complexes
    HATB complex
     103440806
   HDAC complexes
    Sin3A-HDAC complex
     103440806
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     103440806
    PRC2.2
     103440806
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     103440806
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    103440806
  Chromatin remodeling factors
   NuRD complex
    103440806
   NuRF complex
    103440806
   NuRF complex (fruit fly)
    103440806
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz CAF1C_H4-bd Beta-prop_CAF1B_HIR1 WD40_Prp19 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_EML_2 WDR55 WD40_WDHD1_1st Beta-prop_TEP1_2nd EIF3I Beta-prop_EML WD_LRWD1 Beta-prop_WDR75_1st Beta-prop_WDR19_1st WD40_MABP1-WDR62_2nd WD40_RFWD3 MIOS_WD40 Beta-prop_NUP159_NUP214 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_1st WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_SPT8 Cytochrom_D1 Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 103440806
NCBI-ProteinID: XP_008377737
LinkDB
Position
05:complement(join(24179725..24179950,24180132..24180227,24180763..24180887,24181106..24181249,24181357..24181683,24181900..24182205))
AA seq 407 aa
MAEDQDQDSAVLEEEYAVWKKNSPFLYDLIISHPLEWPSLTVHWAPSAPQPHTDSSLAVH
KLVLGTHTSDDYPNFLMVADALLPTSQPNFGAISETDPVMPKVEITQKIRVFGEVNRARW
MPQKPTIVGAKTSGTDVYVFDCSKQEGKKHQEEACDPDLRLRGHDKEGYGLSWSFLKEGY
LLSGSYDCKICLWDVSASAQEKVLDPIHVYERHESVVGDVSWHPKNENLFGSVGDDCQLM
IWDLRTNQTQHCVKAHEKEVNYLSFNPYNEWILATASSDTTVGLFDMRNLTVPLHVLSTH
GEEVFQVEWDPSHETVLASYADDRRLMVWDLNRIGDEQAEGDGDDGPPELLFVHGGHKAK
ISDFSWNKNEPWVISSVSEDNTLQVWQIADSIFGDDDDDVQAQPSCV
NT seq 1224 nt   +upstreamnt  +downstreamnt
atggcggaagaccaggaccaagattcagctgtcttagaggaagagtacgccgtctggaag
aagaacagccctttcctttacgaccttatcatctctcaccctctcgaatggccgtctctc
accgtccactgggctccctcggcgccgcagccccacaccgactcttccctcgccgtccac
aagctcgttcttgggacccacacctccgatgactaccccaactttctcatggtcgccgac
gccctcctccccacatcccagcccaactttggcgccatttccgaaactgaccctgtgatg
cctaaggtggaaataacgcagaagattcgggtgtttggggaagtgaatagggcacgatgg
atgccgcagaagccgactattgtgggtgcaaagaccagcggtacggatgtatatgtgttt
gattgttccaaacaagaaggaaagaagcatcaagaggaagcctgtgatcctgatttgagg
ttaaggggtcatgacaaagaagggtatggcctgtcttggagctttttgaaggagggttac
cttttgagtggttcatatgattgtaaaatttgcttgtgggatgtttctgcttcggctcaa
gagaaggtgcttgatccaatccacgtttatgagcgtcatgagagtgtggttggagatgta
tcatggcatccaaagaacgagaatttgtttggatctgttggggatgattgtcagttgatg
atatgggacttgcgcacaaaccaaacccaacattgtgtcaaagctcatgagaaagaggta
aattatctttctttcaatccgtataatgaatggattttggccacagcatcttcagacacc
actgttggtctgttcgatatgagaaatctgacagtgccattgcatgttctgagtactcac
ggggaggaagtattccaggttgaatgggatcctagtcacgaaactgtgttggcatcgtac
gctgatgacagaaggttgatggtttgggacctcaacaggattggggatgagcaggcagag
ggagacggggatgacggaccaccagaacttctctttgtacatggcggtcacaaagcaaag
atatctgatttctcttggaacaaaaatgagccatgggtcatttcaagcgtttctgaagac
aacactcttcaggtttggcagattgctgacagcatatttggcgacgacgacgatgacgtg
caagcccaaccttcctgtgtgtaa

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