Malus domestica (apple): 103441236
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Entry
103441236 CDS
T03194
Name
(RefSeq) LOW QUALITY PROTEIN: WD repeat-containing protein ATCSA-1
KO
K10570
DNA excision repair protein ERCC-8
Organism
mdm
Malus domestica (apple)
Pathway
mdm03420
Nucleotide excision repair
mdm04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
103441236
09124 Replication and repair
03420 Nucleotide excision repair
103441236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mdm04121
]
103441236
03400 DNA repair and recombination proteins [BR:
mdm03400
]
103441236
Ubiquitin system [BR:
mdm04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul4 complex
Target recognizing subunit (DCAF)
103441236
DNA repair and recombination proteins [BR:
mdm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
103441236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
103441236
NCBI-ProteinID:
XP_028962670
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All DBs
Position
8:6868297..6871939
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AA seq
411 aa
AA seq
DB search
MVHVIQTLQLSNHKDIISPHRGSVNSLXFDLTEGQYMLSGVSDASAAVFDVQRGTDNVGG
GAITRHKWLLAMDKQHEHGHKYAVSSAVWYPVNTGLFVTGSYDHHINVWDTNTTQVVMDF
KMSGKMYRTAMSPLATSHMLIAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSTSS
EWALLTGGCDGAIRFWDIRRAGFFLVLDQSQSQLGRRPPILKRSATGSTVKSSSPSQSTS
AKGRAAQRKLTNGSGAKHSPIGKGPVKGSMKQILHPGMLSSQDCATAPYGAVTRLKVTED
GMYLLSALXVPIQDLWDIESGCNTLVDFETVRMQSSKPIQLATSQNSELVFVPCMTAVKA
FDMWSGKTSLKFRGHYEHVNCCWFNSQDQELYTGGNDRQILVWSPIQNGFG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggtacatgttatccaaacactccaactctccaatcacaaagacatcatctcccctcat
cgaggctccgtcaactctctctagttcgatttgacggagggccagtacatgttatccggc
gtctctgatgcttccgccgccgtgtttgatgtccagcgtgggaccgataacgtgggcggc
ggagctatcacgaggcataagtggctgcttgcgatggataagcagcacgagcacgggcat
aagtatgcggtgtcttccgccgtgtggtatcccgtcaacaccggactgtttgtgacgggg
tcgtacgatcatcacatcaatgtttgggacacgaatacgactcaggtagttatggacttc
aagatgtcggggaagatgtaccggactgcaatgtcgccgttggcaacttctcacatgctc
attgctgctggaaccgaagatgttcaagtccgcctctgtgatattgcctctggggctttt
gctcacaccttgtctggccaccgcgatggtgtgatgactgtggaatggtctacttctagt
gagtgggctttgcttacaggtggatgtgatggtgcaatacgtttttgggacattagacgt
gctggattttttcttgttttggatcaatctcagtctcagctagggagacgtccacccatc
ctgaaacgctctgccacaggttcaacagttaagtcctcgtccccaagtcaaagcacatct
gcaaaaggtcgggcagcacaaaggaaacttacgaatgggagcggtgcaaagcactcacct
attggtaaaggtccagtaaagggatctatgaagcaaatattacatccagggatgctatct
agtcaggattgtgccactgctccttacggtgctgttactcgattaaaagtcactgaagat
ggcatgtacctcttaagtgcactttgagttccgattcaagacttgtgggatatagaatct
ggctgcaatactttggtggactttgaaactgtgcgtatgcaaagcagcaagcccatacag
ttagctacaagtcagaattcggagcttgtttttgttccatgcatgacagctgtgaaggca
ttcgatatgtggtcaggtaaaacatccctgaaatttcgtggtcactatgaacatgtaaac
tgttgctggtttaattcacaggatcaggaattgtacactggtggcaatgatagacaaatt
ctagtttggtcgcccatccagaatggtttcggatga
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