Malus domestica (apple): 103441510
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Entry
103441510 CDS
T03194
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm03013
Nucleocytoplasmic transport
mdm03015
mRNA surveillance pathway
mdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103441510
09122 Translation
03013 Nucleocytoplasmic transport
103441510
03015 mRNA surveillance pathway
103441510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103441510
03041 Spliceosome [BR:
mdm03041
]
103441510
Enzymes [BR:
mdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103441510
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103441510
Spliceosome [BR:
mdm03041
]
Complex C
Other components
EJC/TREX
103441510
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103441510
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
103441510
NCBI-ProteinID:
XP_070683051
LinkDB
All DBs
Position
08:complement(join(14086284..14086294,14086754..14086817,14086903..14086986,14087554..14087698,14088281..14088465,14088586..14088642,14089312..14089430,14089531..14089762,14089867..14090039,14090432..14090532,14090747..14090856))
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AA seq
426 aa
AA seq
DB search
MGETRDDVYDEELVDYEEEEEKAPDSAAKVNGEAPKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLC
HTRELAYQICHEFERFSTYLPDLKVAVFYGGVSIKLHKDLLKNECPHIVVGTPGRILALA
RDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKDIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEAEKNCKLNDLLDALDFNQVVIFVKSVSRA
AELNKLLSECNFPSICIHSGMNQEERLKRYKGFKEGQNRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNDVQERFEVDIKELPEQIDT
ATYMPS
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaaactagggacgacgtctacgacgaggagctcgtcgattacgaagaagaggag
gagaaggcacccgactccgcagctaaagtcaacggagaagcccccaaaaagggttatgtt
ggaattcacagttcagggttcagagatttccttttgaagcctgaacttcttcgtgctatt
gtcgactctggatttgagcatccttctgaagtgcaacatgaatgtattcctcaagctatc
ctggggatggatgttatatgtcaggctaaatctgggatgggaaaaactgctgtgtttgtt
ctatcaactttacaacagattgaccctgttgcaggccaagtatctgcacttgtcctttgc
catactagagaattagcataccagatttgtcatgaatttgagaggttcagtacgtacctg
cctgatctcaaggttgctgtcttctatggtggtgtcagtatcaaacttcacaaagattta
ctgaaaaacgaatgcccgcacattgttgtcggaactcctggaagaatactagcactggca
agagataaagacctgtcgttgaaaaacgtgaggcattttattcttgatgaatgtgacaag
atgcttgaatcacttgacatgcggagagatgtgcaggagatcttcaagatgacgcctcat
gataagcaagtgatgatgttttccgcaacactcagcaaagacatccgcccggtttgcaag
aaatttatgcaagatcctatggaaatatatgttgatgatgaagccaagttgaccttgcat
ggtctagtgcagcactacatcaagttaactgaggcagagaagaactgcaagttgaatgac
ctccttgatgcattggacttcaatcaagttgttatcttcgtcaaaagcgttagcagagct
gctgagctgaacaagttactttcagagtgtaactttccctctatatgcatccattctgga
atgaaccaagaagaaaggttgaagcggtacaaaggattcaaggagggtcagaacaggatt
cttgtggcaactgatttagtcggtagaggaattgacatcgaacgtgttaacattgttatc
aactacgacatgccagattctgctgacacttatttacacagggttggcagagctggtagg
tttggcaccaaaggtcttgcaattacgtttgtttcatccgcagcagactctgatgttcta
aatgatgttcaggaaaggtttgaggttgatataaaggagcttcctgaacagattgacact
gccacatacatgccatcttaa
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