Malus domestica (apple): 103441543
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Entry
103441543 CDS
T03194
Name
(RefSeq) replication factor C subunit 3
KO
K10756
replication factor C subunit 3/5
Organism
mdm
Malus domestica (apple)
Pathway
mdm03030
DNA replication
mdm03410
Base excision repair
mdm03420
Nucleotide excision repair
mdm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
103441543
03410 Base excision repair
103441543
03420 Nucleotide excision repair
103441543
03430 Mismatch repair
103441543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mdm03032
]
103441543
03036 Chromosome and associated proteins [BR:
mdm03036
]
103441543
03400 DNA repair and recombination proteins [BR:
mdm03400
]
103441543
DNA replication proteins [BR:
mdm03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
103441543
DNA Replication Termination Factors
ELG1-RFC complex
103441543
Chromosome and associated proteins [BR:
mdm03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
103441543
DNA repair and recombination proteins [BR:
mdm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
103441543
Check point factors
HRAD17(Rad24)-RFC complex
103441543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
Rad17
DNA_pol3_delta2
RCF1-5-like_lid
AAA_lid_RFC1
AAA_22
AAA_16
AAA_11
AAA_assoc_2
AAA_5
AAA_24
AAA_30
AAA_14
RuvB_N
DUF815
ATPase_2
AAA_7
AAA_19
AAA_2
nSTAND_NTPase5
TniB
bpMoxR
ResIII
SLFN-g3_helicase
DNAX_ATPase_lid
nSTAND3
AAA_3
Mg_chelatase
AAA_28
AAA_25
MCM
TIP49
AAA_18
Motif
Other DBs
NCBI-GeneID:
103441543
NCBI-ProteinID:
XP_008378444
LinkDB
All DBs
Position
08:complement(join(18470423..18470522,18470832..18470900,18470980..18471043,18471135..18471264,18471537..18471618,18472161..18472320,18472412..18472500,18472722..18472938,18473366..18473555))
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AA seq
366 aa
AA seq
DB search
MAEPITLMDIDDDDNPSVQPNNKGKNVVVSAAAPSHGKATPWVEKYRPQSLADVAAHRDI
VDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGVQYHNMILELNASDDRGINVV
RQQIQDFASTQSFSFGGDSAKSSVKMVLLDEADAMTKDAQFALRRVIEKYTKNTRFSLIC
NHVNKIIPALQSRCTRFRFAPLEEFHVSERLKHVIEAEGLDVPASGLAAVIRLSNGDMRR
ALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFAESFKRISDMKARKGL
ALIDIVREVTMFVFKIMMPAEVRVKLINDLADIEYRLTFGCNDKLQLGSLIATFTKARSA
LVAAAK
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atggcggagccaatcactctcatggacatcgacgacgatgacaacccatctgtacaaccc
aacaacaaaggcaaaaacgtcgtcgtctccgccgccgccccttcccacggcaaagccacg
ccgtgggtcgagaagtaccgccctcaatccctcgcggacgtcgctgctcaccgcgacatt
gtcgacaccattgataggcttactagtgagaacagattgccgcacctcctactatatggc
cctcctggtactggcaaaacttcaactattcttgctgtggcacgcaagctctatggagtg
cagtaccacaatatgattctggagttgaatgcatccgatgacagggggatcaatgttgtg
cgacaacagattcaagattttgctagcacgcagagtttctcgtttgggggtgatagtgca
aagtcatctgtaaaaatggtattgctggatgaggcggatgctatgacaaaggatgctcaa
tttgctttgcgaagggtgattgagaaatacacaaagaatactaggttttcactaatttgt
aatcatgtcaacaagatcattccagcattacaatcacgatgtactcgtttccgatttgct
ccacttgaggagtttcatgtctcagagagactcaaacatgttatagaagctgaagggctt
gatgtgcctgcgagtggcttagcggcagttatacggcttagcaatggtgacatgagaagg
gctctgaacattttgcagtcaactcatatggcttcacagcagataactgaagaagcggta
tatctttgcacaggaaatccattgcccaaagatattgagcaaatatcttactggcttttg
aacgaatcatttgctgagagtttcaaacgaatatctgacatgaaagcaagaaaagggttg
gctttgatagatattgtaagagaagtgaccatgttcgtttttaagattatgatgcccgca
gaagttcgagttaaattgattaatgatttagctgacatagagtacaggttgacgtttggg
tgcaatgataagttgcaactcggatcactgatagccaccttcacaaaagctcgatctgca
cttgttgctgctgcgaagtag
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integrated database retrieval system
