KEGG   Malus domestica (apple): 103441992
Entry
103441992         CDS       T03194                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103441992
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103441992
   03041 Spliceosome [BR:mdm03041]
    103441992
   03009 Ribosome biogenesis [BR:mdm03009]
    103441992
   03016 Transfer RNA biogenesis [BR:mdm03016]
    103441992
Enzymes [BR:mdm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     103441992
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     103441992
Spliceosome [BR:mdm03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    103441992
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    103441992
Ribosome biogenesis [BR:mdm03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    103441992
Transfer RNA biogenesis [BR:mdm03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    103441992
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk ResIII DEXQc_Suv3 Helicase_C ATPase_2 nSTAND3 AAA_27
Other DBs
NCBI-GeneID: 103441992
NCBI-ProteinID: XP_008378945
LinkDB
Position
08:join(30750206..30750493,30750613..30750813,30750910..30751467,30751885..30751989,30752471..30752581,30752967..30753217,30753347..30753470,30753653..30753935,30754014..30754168,30754466..30754615,30754712..30754944,30755085..30755349,30756363..30756641)
AA seq 1000 aa
METEAASLKRKSEGEAELEEAPQKQQKRDNGWASVDDEAVACLHDVSYPEGYVVPPPSSS
SSAAAEASEPAKKFPFPLDPFQSEAINCLEKAESVMVSAHTSAGKTVVASYAIAMSLRNK
QRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEI
TREVAWIIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWLAKIHRQ
PCHIVYTDYRPTPLQHYIFPSGGNGLYLVVDEKGKFREDSFQKALNALAPAADSAKKKEN
GKWQKGLIMGKAAEESDIFKMVKMIIQRQYDPVILFSFSKRECESLAMQMAKLDLNGDNE
KANVETIFWSAMDMLSDDDKKLPQVSHMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLI
KCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICI
LMVDEKLEPSTAKMMLKGSADCLNSAFHLSYNMLLNQLRSEDGNPENLLRNSFYQFQADR
AIPSLEKQAKDLEKERDSIIIEEEDSVKNYYNLLQQYKSLKQELRDIVLSPKYCLPFLKP
GRLVSIQCAKSDESSPSFSIEDLVTWGVILNFQRVKTASEDDASRKPEDSNYTVDVLTRC
RVSTDEVAKKTIKIIPLKEAGEPAVVSISISQINSMSGLCMVIPKDLLPLPARENTLKRV
LETLSRFDKGKIPLLDPEEDMKIESSSYKKVSRRIEALENLFDKHEVARTPLIEQRLKVF
HMKQDLAAKIKSIKKTMRSSTALAFKDELKARKRVLRRLGYVTNDGVVELKGKVACEISS
AEELTLTELMFNGAFKDINVEEMVSLLSCFVWQEKLKEATKPREELDLLFSQLQDTARRV
AEVQLECKVEIDVDSFVSSFRPDIMEAVYAWAKGSKFYEIMSATPVFEGSLIRAIRRLEE
VLQQLIQAAKSIGETELESKFEEAVSKIKRDIVFAASLYL
NT seq 3003 nt   +upstreamnt  +downstreamnt
atggaaacggaagcggcatccctgaagaggaagtcggagggagaggccgagttggaagaa
gctccacagaaacaacaaaagagggacaacggttgggcaagcgtcgacgacgaagcggtg
gcctgcttgcacgacgtgtcgtatcctgagggctatgtcgttcctcctccttcttcttct
tcttcagctgcagcagaagcttctgagcctgccaagaaattccccttccctctcgaccct
tttcagtctgaggccataaactgcctcgaaaaagccgagtccgtcatggtgtctgctcat
acgtcggctgggaaaactgtggtggcatcgtatgcgattgcaatgtctctaagaaacaag
cagagagtgatatacacttcaccaatcaaagcactgagcaaccaaaagtatagagagttc
aaagaggagttttccgacgttggcttgatgacgggcgatgtaactatcgaccccaatgct
tcctgcttggttatgaccacagaaatctggcgtagcatgcagtacaaagggtcagagata
acgcgtgaggtggcgtggattatctttgatgaggtgcattatatgcgtgatagggagaga
ggtgtggtgtgggaagagagcattgttatggctccaaagaatgctcggtttgtgttcctc
tcagcaactgtgccaaatgctaaggaatttgctgattggcttgcaaagattcaccgtcag
ccttgtcacattgtctatactgattataggccaactcctctgcagcattatattttccct
tctggagggaatggtttgtacttggtagtagatgaaaaagggaaatttcgcgaagacagc
tttcagaaagctcttaatgctcttgctcctgctgccgatagtgctaagaagaaggaaaat
ggcaagtggcagaagggtttgatcatgggcaaggctgctgaggaaagtgacatcttcaag
atggtcaaaatgataattcagcgtcagtatgatcctgtaatactttttagctttagcaaa
agggagtgcgaatctcttgcaatgcagatggcaaaattggatctaaatggggacaatgag
aaagcaaatgtagaaaccatcttctggagtgctatggatatgctttctgatgatgataaa
aagttacctcaggtttcacatatgctaccccttttgaagcgtggaattggtgtgcatcat
tctggcttgcttccaattctaaaggaagtgattgagatattatttcaggaaggtctaatc
aagtgtttatttgccacagagaccttcagcataggattgaacatgcctgcaaaaactgtt
gtgtttaccaatgtccggaaatttgatggtgataagttcagatggctatccagtggagaa
tatatacaaatgagtggccgtgctggtcgccgtggtattgataagcgtggaatatgtata
cttatggtagatgagaagctggaaccatctactgctaaaatgatgcttaaaggaagtgct
gattgtttgaacagtgcttttcatttgagctacaacatgcttctgaatcaattacgcagc
gaagatggtaatccagaaaatttgcttcgtaactcgttctatcaatttcaagctgatcgt
gccatccccagtcttgagaagcaagcaaaggatcttgagaaagagagggattcaattata
attgaagaagaagatagtgtaaagaattattataatctgttacagcaatacaagagtttg
aaacaggaacttcgtgatattgtgctttctccaaagtactgcttaccatttctgaaacct
ggtaggcttgtctcaatccaatgtgctaaaagtgatgaaagttccccctctttttccatt
gaggacctcgtcacatggggagtgatactaaattttcaacgggtgaaaactgcttcagaa
gatgatgcaagtagaaaacccgaagattcaaactacacagtggatgttctgacaaggtgc
agggtgagtacagatgaagttgctaagaaaaccatcaaaattatccctctcaaagaggca
ggagaacctgctgttgtctccatctccatatctcagataaatagtatgagtggactttgt
atggtcattcctaaggatcttttgccactaccagctcgagaaaacacactgaagagagtt
cttgaaactctgtcaagatttgataaaggaaagattcctcttcttgatccagaagaagat
atgaagattgaaagtagttcatacaaaaaggtgtctcgtaggatcgaggctttagagaac
ctgtttgacaagcatgaagttgctagaactccacttattgagcaaaggcttaaggttttt
catatgaagcaggatttggctgccaagatcaagtcaatcaagaaaacaatgcgctcttcc
actgcattagcttttaaagatgaactgaaggcaagaaaacgggtccttcggaggctagga
tatgttacaaatgatggtgttgtggagttgaagggtaaagttgcttgtgaaatcagtagt
gcagaagagttgaccctgactgagctcatgttcaatggggctttcaaggacataaacgtg
gaagagatggtgtctcttctctcatgttttgtgtggcaggagaagcttaaggaagctaca
aaaccaagggaagagcttgacctgctattttcacaattacaagatacagctcggagggtt
gctgaggttcagcttgagtgcaaggtcgaaattgatgttgacagctttgtgagttctttt
cggcctgatattatggaggctgtgtatgcttgggcaaaagggtccaaattctacgagatc
atgtcagctacacctgtttttgagggcagcttgatcagggcaattaggagattagaggaa
gtccttcagcaactgattcaagcagccaagtctattggagaaaccgagcttgagtcaaaa
tttgaggaggctgtttcgaagatcaagagggacattgtctttgcagcttccctatacttg
taa

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