KEGG   Malus domestica (apple): 103443155
Entry
103443155         CDS       T03194                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103443155
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103443155
   03012 Translation factors [BR:mdm03012]
    103443155
Enzymes [BR:mdm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     103443155
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     103443155
Translation factors [BR:mdm03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    103443155
SSDB
Motif
Pfam: Helicase_C DEAD OB_NTP_bind R3H HA2_C Ank_2 HA2_N AAA_19 ResIII ATPase nSTAND3 AAA_22 Ank_5 AAA_23 NPHP3_N Rad17 AAA_7 Ank_3 T2SSE ABC_tran
Other DBs
NCBI-GeneID: 103443155
NCBI-ProteinID: XP_008380172
LinkDB
Position
09:join(11077495..11077588,11077822..11077912,11078085..11078388,11078504..11078578,11078864..11078908,11081167..11081257,11081378..11081436,11081954..11082115,11082349..11082401,11082722..11082755,11082878..11082967,11083059..11084063,11085085..11086176,11086297..11086935)
AA seq 1277 aa
MARKKKHTKVDEPTKNRLLDALERFNASTDEVYTFEAGLSSFERAFVHEQCRRWSMKSKS
KGKGEHRCISVSKIRKKNTDVPSLSSLTFSEGTKEVLSDLFVHYPPGDEVEDLELSGKSS
NKNESAQRKRDNTFRKPLMNKEEIAKKVESLASKLKNNANLRKIFEDKSKLPIMSYKDVI
TSTVESHQVILISGETGCGKTTQVPQFILDHMWGKGEACKIVCTQPRRISATSVAERVSQ
ERGENVGDDIGYKIRLESKAGRQSSIVFCTNGILLRMLVSRGADRSKADASNKDTEHNLA
DITHIIVDEIHERDRYADLMLAIIRDMLSSHPHLHLILMSATVDAERFSKYFGGCPIIRV
PGFTYPVKSFYLEDVLSILKSAEHNHIDNTVVGLQTEDPDLTEEDKLALDEAINLAWSND
EFDRLLELLSTEGTHKVFDYQHSLTGLTPLMVFAGKGRTAYVCMLLSFAADCHLRAKDGT
TALELAERENQQEIVEILKEHIENSLSNSMKEQLLLDKYLQYFNPENIDVVLIEQLLKKI
CNDSKDGAILVFLPGWDDINKTRERLLMNPHFRDSSRFLIIALHSMVPSFEQKKVFKRPP
HGCRKIVLSTNMAETAITIDDVVYVIDTGRMKEKNYDPYSNVSTLQSSWVSKANAKQREG
RAGRCQPGICYHLYSRLREASLPNFQEPEIKRMPIEELCLQVKLLDPECKVEEFLRKTLD
PPRAETIRNAVSVLQDIGALSLDEKLTDLGEKLGTLPVHPLTSRMLFFAILMNCLDPALT
LACASDYRDPFALPMLPDERTRAAAAKFELASLYGGLSDQLAVIAAFDCWKAAKERGQER
DFCSRYFVSSSTMHMLSGMRGQLQKELSRHGFIPEDVSRCSLNARNPGILRAVLVAGLYP
MVGRLLPPLKNGKRTLVETASGGRVQLHVHSINTKLSYKANPGERPLIVYDEVTRGDGGM
NIRNCTVVAPLPLLLLSSEIAVAPADDDDDNDEGSDVEYIEDGSDEDVMEIDRKSGGQRE
EKIMSSPDKSVKVIVDCWLHFGSKALDVAQVYCLRERLSTAILFKVTHPRKDLPPALGAS
VYAIACALSYDGLSGITLPEESVESPTSVLESQAYLQFLISGNSHDQHILRPHSKPTRNT
SHKLSYSPKPCEGHGTSLMSHNAHQTHQSALVSHGTHQTHLSPHERPPPQGTSVLAANGA
VRSYVKGNKAANLSGPSSHSVGPPLHSASMTAHQKPPSEGTRLPGINGGAKVNEPLSQTV
GQPVKSTSRKKRRNGAG
NT seq 3834 nt   +upstreamnt  +downstreamnt
atggcgaggaagaagaaacatactaaagttgatgaacccacaaagaaccgattacttgat
gcactcgagcggttcaacgcttcaactgatgaagtttacacattcgaggccggtctttcg
agcttcgaacgggctttcgtgcatgaacaatgcaggagatggtctatgaaatcgaagagt
aaagggaaaggggaacaccggtgtatctctgtttccaaaattagaaagaagaacactgat
gtaccaagtctcagttccttgacattttccgaaggcacaaaagaagtattaagtgacttg
ttcgtacattacccacctggtgatgaagtggaggacttagaattgtctgggaaaagtagc
aataagaatgagagtgcccagcggaagagggacaatacgtttcgcaagcctttgatgaac
aaggaagaaattgcaaagaaagtggaatcacttgcttctaaattaaagaataacgctaac
ttgagaaagatttttgaagacaagtccaagcttccaattatgtcctacaaggatgtcatt
acatcgacagttgaatctcaccaggtaattcttatatctggtgagactgggtgcggaaaa
acaacacaggtcccacaatttattttggaccacatgtggggcaagggtgaggcatgtaaa
atagtgtgtactcaacctcgacgtatctcagccacttcagttgctgagagagtctctcag
gaaagaggagaaaatgtcggagatgatattggatacaagatacggttggaaagtaaagct
gggaggcaatcatcaattgttttctgcacaaatggaattttattgaggatgctagtttcc
agaggtgctgatagatcaaaagcagatgcctcaaacaaagataccgagcataatcttgct
gacataactcacattatagtggatgaaattcatgaaagggatcgctacgctgatttgatg
ctagcaattatcagagacatgctttcttcacaccctcatctacatctgatattaatgagt
gcgactgttgatgctgaacgattttcaaaatattttggtggctgcccaattatccgtgtt
cctgggttcacttatcctgttaaaagtttctatttagaggatgtactttctatcctgaaa
tctgcagaacataatcacattgataacactgtagtaggtttacaaactgaagaccctgac
ttaaccgaggaagataagcttgctttagatgaagctattaatttggcttggtctaatgat
gagtttgatcgccttctagaattgctttctactgaaggaacacacaaagtctttgattac
cagcattctttaaccggacttacgccgttaatggtgtttgctggaaagggtagaactgca
tatgtttgcatgcttttatcttttgctgctgactgccatttacgggccaaggatggaaca
accgcattggagttggctgaacgggaaaaccagcaagaaattgttgagatattgaaagag
catatagaaaattctctttctaactcaatgaaagaacaactgttacttgataaatatctc
caatatttcaatcctgaaaatattgatgtggttcttatagagcaattattaaaaaaaatt
tgtaatgattcaaaagatggagccatccttgttttccttccagggtgggacgatataaat
aaaacccgggagagattacttatgaatccacatttcagagattcttcaaggtttctgata
atagctctacattcgatggttccatcttttgagcaaaagaaggtcttcaaacgtccccct
cacggttgccgtaaaattgttctttcaactaatatggctgaaactgccatcaccatagat
gatgttgtttatgttatagacactggtcggatgaaagaaaaaaattatgatccttatagt
aatgtatcaactcttcagtcttcttgggtgtcaaaggcaaatgccaagcagcgagagggc
cgagcaggccgttgccagcctggaatctgttatcatctctattctagacttcgagaagct
tcattgccaaactttcaggagcctgagattaagagaatgccaattgaggagctctgtctt
caggtgaagttactcgacccagaatgcaaggtagaagaattcttgcgcaagacattggat
cccccacgtgcagagaccatacgcaatgcagtttctgttcttcaagatattggggcactg
tcgctcgatgagaaacttacagatcttggagagaagttaggcactctacctgttcatcca
ctgacgagcaggatgcttttctttgcaatactgatgaactgtctagacccagctttgact
ctggcatgtgcttctgactacagggatccatttgccctgcctatgttacctgatgaaagg
acgagagctgctgctgctaaattcgaacttgcttcattgtatggtggccttagtgatcag
ctagcagtcattgcagcatttgactgctggaaggctgcaaaagaaaggggtcaagagaga
gatttctgttctcgatactttgtgtcttcaagcacgatgcacatgctatctggtatgcgt
gggcagctccaaaaggagctaagtcggcatgggtttattcccgaggatgtatcaagatgt
agcttgaatgcaaggaacccaggtatactccgtgctgttcttgtggccggtttgtatcca
atggtgggtagattgcttcctcctctcaagaatgggaaacgaactttagtagagactgct
agtggtggtagagttcaattgcacgtccactcaattaacactaagttatcatacaaggca
aatcctggggaacgtcctttgattgtttatgatgaggtaactcgcggggatgggggtatg
aatatacggaactgcactgttgtcgcaccacttccattattattgctttcatcagaaatt
gctgttgctccagccgatgatgatgatgacaatgacgaggggagtgatgtggagtacata
gaggatggaagtgatgaagatgtaatggaaatagatcgtaagtcaggtggacaacgcgag
gagaaaattatgtcgtctcctgataaatcagtcaaagttattgtcgattgttggcttcat
tttgggtccaaagctcttgatgttgctcaagtttactgcttgagagaacgcctatctaca
gcaatcttattcaaagttacgcatccaaggaaagatttgcctcctgctctcggggcctct
gtctatgctatcgcatgtgctctatcttatgatggtctatctgggatcacattaccggag
gaatctgtggagtcaccgacttctgtgctggagagtcaagcgtacttgcaatttcttatc
agcggtaactcacatgaccaacacatcctccgaccacactctaaaccaacacgtaacaca
agccataaactttcttactctcccaaaccatgtgaggggcatggaacatcacttatgagc
cataacgcacaccaaacacatcagtctgcacttgtgagccatgggacacaccaaacacac
ctcagtccacatgagaggcctccaccacaaggtactagtgtacttgccgctaatggagca
gtgaggtcttatgtgaagggaaacaaagcagccaacttgagtggcccttcaagtcacagc
gttggaccaccgcttcattcggcttccatgactgcacaccagaagcctccatcagaaggt
actaggttacctggcattaatggaggggcaaaggtgaatgagccattaagtcagactgtt
ggccaaccagttaagtcaacttcgaggaagaagcgtaggaatggtgccgggtaa

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