KEGG T03194: 103443743

Malus domestica (apple): 103443743

Entry

103443743         CDS       T03194

Name

(RefSeq) MMS19 nucleotide excision repair protein homolog isoform X1

K15075

DNA repair/transcription protein MET18/MMS19

Organism

mdm Malus domestica (apple)

Brite

KEGG Orthology (KO) [BR:mdm00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mdm03036]
    103443743
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103443743
Chromosome and associated proteins [BR:mdm03036]
Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    103443743
DNA repair and recombination proteins [BR:mdm03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     103443743

SSDB

Motif

Pfam:

MMS19_N MMS19_C HEAT_EZ

Other DBs

NCBI-GeneID:

103443743

NCBI-ProteinID:

XP_008380856

LinkDB

Position

09:join(18395404..18395475,18395717..18395779,18395863..18395917,18397236..18397333,18397427..18397585,18397722..18397781,18398248..18398436,18399083..18399136,18400556..18400642,18400761..18401475,18402169..18402545,18402812..18402885,18403855..18403960,18404136..18405025,18405147..18405222,18405310..18405421,18405604..18405680,18405883..18405963,18406129..18406208,18406306..18406321)

AA seq 1146 aa
MAGPTELIRHIESYVDTSCSPSQQAASLNSIITLVKNDLLTIEVLVKEMGMYLTTTDNVI
RARGILLLAEVLTGLASKPLDTATIHSLIGFFTDRLADWRALRGALVGCLALLRRKASAG
MVCASDAKVVAQTYVESLQVQALGQHDRKLCFELLQCLLVRHPNEVASLGETFFYGICQA
MDGEKDPHCLMLTFPIVEALVQIYPDPSGSLESFCEDLFTLLGCYFPIHFTHLKDEDSDV
KRDDLSKALMSALSSTPLFEPFVIPLLLEKLSSSLPLAKVDSLKYLNHCTAKYGADRMAK
HAETIWISVKHAISNSLEKPAISFTEEPLYGLGFQENEVATEALMLLEKVTMQNEVLFVN
LIVRDEDINTVFNSIASYENYNIPLQGKQRLHAVGRILYKITKTSAASCKSVFESFFPCL
MNTLEISVRNSSGDCSLNENSFSLKRFNFGALYLSVELIEACRDLIMKFKDLAPKPDTTH
ATCCYMLQSFADSLIIAFCSSLATHLNEVHGAEIYFTVKGLQMLATFPGDILPISKIIFE
NILTELMSIILVDFNKTLLWKLALKALVHIGSFVDAYHESEKALSYIDLVVEKTLSLVSH
DDFNVPFPLKLETVSEIGASGLNHMLRIVQGLEEAIVGKLSDYVHGKLNLAEGTIQLLEC
YCNKILPWIKETGGLEEVLLRFVINIWNATESCKDFSIQVQEEELLDAAMMAMKLAVGSC
SDESQKIMVDKAYSVLSSNISIPFKESMDATSSIQLQELHVSEQRDTFSHRDEWIVSLFA
SIIIAVHPKTQIANLKGLLHLFMTTLLKGCVPVAQALGSVINKLGTKSKDTENSKDCTLE
EAIDMIFGTNIWSFNENGVLKTSGTSNGIKVSLTDLCLGFLSNKQLQVRALVGLAWIGKG
LLLLGHEKVKDVTKIFLECLLAEGRKRAMELQQGLENSYEQHSVMRTAADAFHILMSDSE
VCLNRKFHAITRPLYKQRFFSSVMPILQSMIINSDSSLSRSMLVRASAHLISNAPLIAIL
SEAEKLMPIMLDGLSVLSEDILDKDKLYSLLLVLSGILTDKNGKVAVVENAHILINCLTR
LIGYPHMMLVRETAIQCLVATSELPYARIFPMRTQVLQAISKALNDPKRAVRQEAVRCRR
AWASIA

NT seq 3441 nt +upstreamnt +downstreamnt
atggccggacctaccgaactgattcggcacattgaatcgtacgtcgacacgtcttgctct
ccttcccagcaggctgcgagcttgaattcgatcattacgctcgtgaagaatgacctttta
actatcgaagtgctggtgaaagagatggggatgtatttgaccactacggataatgtcatc
cgtgctcgaggtatccttcttttggcagaagttctaacgggtctggcatcaaaaccacta
gatactgcaactattcatagcttgataggattcttcacagacagactggcagattggaga
gctttacgtggtgcacttgtcggttgcttggcattactgaggaggaaagctagtgctgga
atggtctgtgccagtgatgcaaaagttgttgctcaaacttatgtagagtccctacaggtg
caagctttagggcagcatgacagaaagctttgctttgagctattgcaatgccttttagtg
cgccatcccaatgaagttgcttcactgggtgaaacctttttctacgggatctgtcaagca
atggatggagaaaaagatcctcattgcttaatgttaacatttcctattgttgaggctttg
gtgcaaatatatccagacccatctggctcacttgaaagtttttgtgaagatctctttaca
ttattgggatgttactttcccattcattttactcatctgaaagatgaggactctgatgtg
aaaagagatgacctctcgaaggcactaatgtcagcgttgtcgtccacacctttattcgag
ccatttgtcattccattgcttcttgagaaactttcttcatctctgccattagcaaaggtt
gattctttgaaatatcttaaccactgcacagctaaatatggagctgacagaatggcaaaa
catgctgaaactatctggatttcagtgaaacatgccataagtaattctttggaaaagcct
gctatatcctttactgaagaaccactatatggtcttggctttcaagagaatgaagttgca
acagaagctctaatgcttctagaaaaggttaccatgcaaaatgaggtgttgtttgtaaat
ttaattgttcgtgatgaagatataaacacagttttcaactccatcgctagctatgaaaat
tataatattcctttgcaaggcaagcaaaggttacatgcagtcggtcgtatcctttataag
ataacaaagacttctgctgcttcctgtaaaagtgtgtttgaaagtttcttcccttgccta
atgaacactctcgagatttctgtgagaaattcatctggggattgctctcttaatgagaat
tctttttccttaaaaagatttaattttggagctctttatctctctgtggaactcattgag
gcatgcagagatttaattatgaaattcaaagaccttgctccgaagcctgatactacacat
gcgacatgttgctacatgcttcagagctttgcggattcactaatcattgccttttgttct
tccttggccacacatcttaatgaagttcatggtgcagagatttatttcacagtcaagggt
ttacagatgctggctacattccctggagatatcttgccaatatcaaaaattatatttgag
aatattctgacggaactcatgtcaatcatcttagtggatttcaacaagacattgctatgg
aagctagcattgaaggctttagtgcacattggctcatttgtggatgcatatcacgagtcc
gagaaggcactaagctatatagaccttgttgttgaaaagacactttcattggtgtctcat
gatgatttcaatgtgccttttccactaaaactggagacagtctctgagattggtgcaagt
gggctaaatcatatgctaagaattgtacaagggcttgaagaggccatagttggcaagtta
tctgattatgtccatggaaaattgaacttggctgaagggacaattcaacttttggaatgc
tactgtaataagattcttccatggatcaaggaaactggaggtcttgaggaagttctgttg
cggtttgtcattaacatttggaatgccactgaaagttgtaaagattttagcattcaagtc
caggaagaagagcttcttgatgcagccatgatggcaatgaagcttgctgttgggagctgt
tcagatgaaagccagaagattatggttgacaaggcttacagtgttctttcatcaaacata
tccattccatttaaggaatccatggatgcaacctcttcaatccaacttcaagaattgcac
gtttctgaacagagagacacattctctcatagagatgaatggattgtttcactatttgca
tcaataatcatagcggtgcatccaaaaacacagattgcaaatctgaaagggctattgcat
ttgtttatgacaacccttcttaaaggttgtgttccagtagctcaggcgttaggttctgtg
atcaataaattgggtacaaagtccaaggacacggagaattcaaaggactgtaccctggaa
gaagcgattgatatgattttcggaacaaatatatggagtttcaatgaaaatggagtttta
aagacatctggaacaagtaatggcataaaagtgagtcttactgatctatgccttggtttt
ttgagcaataagcagcttcaagtccgtgccctggtaggattagcatggataggaaaaggt
ttgcttctacttggtcatgaaaaagtaaaagatgtaaccaaaatttttttggagtgctta
ctggcagaaggcagaaaacgtgccatggagttacaacaaggtctagaaaacagttatgag
cagcattctgtgatgagaactgctgcagatgcatttcacattcttatgagtgattctgaa
gtttgtttgaaccgaaaatttcatgccataacacggccactctacaaacagcggtttttc
tcttcggtgatgcctattttgcagtctatgataataaattctgattcatcattatccaga
tctatgctggttcgggcatctgcacatcttatatctaatgcccctttaattgctatcttg
agtgaagcagagaagctcatgccgataatgttggatgggttgtccgtgttaagtgaggat
attctggataaagacaagctatacagtcttttgctagttctttctggaatattgacagat
aaaaacggaaaagtagctgtcgtagagaatgcacatattttaattaattgtctcaccaga
ctcattggctacccgcatatgatgcttgtccgagagactgcaattcaatgtcttgttgca
acgtctgagctgccctatgcaagaatctttcccatgagaacacaggtactacaagcaata
tccaaagctcttaatgatccaaagagggctgttcgtcaagaagctgtcaggtgtcgacgg
gcatgggcgtcaattgcataa

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