KEGG   Malus domestica (apple): 103443828
Entry
103443828         CDS       T03194                                 
Name
(RefSeq) protein transport protein SEC13 homolog B-like isoform X1
  KO
K14004  protein transport protein SEC13
Organism
mdm  Malus domestica (apple)
Pathway
mdm03013  Nucleocytoplasmic transport
mdm04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    103443828
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    103443828
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103443828
   04131 Membrane trafficking [BR:mdm04131]
    103443828
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     103443828
Membrane trafficking [BR:mdm04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    103443828
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    103443828
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    103443828
SSDB
Motif
Pfam: Beta-prop_IFT122_1st Beta-prop_THOC3 WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR35_TULP_N Beta-prop_RIG_2nd Beta-prop_Vps41 WDR55 Beta-prop_EIPR1 WD40_Gbeta WD40_MABP1-WDR62_2nd Beta-prop_WDR19_1st Beta-prop_IFT140_1st EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_2nd DSE1_N Beta-prop_HPS5 Beta-prop_WDR41 Beta-prop_WDR75_1st Beta-prop_NOL10_N WD40_RFWD3 Beta-prop_SCAP WD40_CFAP43
Other DBs
NCBI-GeneID: 103443828
NCBI-ProteinID: XP_008380946
LinkDB
Position
09:join(19012375..19012466,19013001..19013916)
AA seq 335 aa
MRVSWFHSSRAIRYPLRPETTSFRSQSLLPWSREMPAQKVETGHQDTVHDVVMDYYGKRL
ATASSDNTIKIIGVSNSSSQHLATLTGHQGPVWQVAWAHPKFGSLLASCSYDGRVILWKE
GNQNEWTQAHVFDDHKSSVNSIAWAPHELGLCLACGSSDGNISVFTARSDGGWDTSRIDQ
AHPVGVTSVSWAPSTAPGALVGSGLLDPVQKLCSGGCDNTVKVWKLGNGIWKLDCFPALH
MHVDWVRDVAWAPNLGLPKSTIASASQDGKVIIWTVGKDGDQWEGKVLHDFNAPVWRVSW
SLTGNILAVADGNNSVTLWKEAVDGEWQQVTTVDP
NT seq 1008 nt   +upstreamnt  +downstreamnt
atgcgagtttcttggtttcacagcagcagagcaattcgctatccacttcgtcctgaaact
acgtcctttcgatcccaatctttgcttccctggagtagagaaatgcctgcacaaaaggtt
gagactggccaccaggacacagtccatgatgtggtcatggattactatggtaagcgcctc
gccacagcttcatccgacaacacaattaagataattggggtgagcaattcatcctctcag
catctagcaaccctgactggtcaccagggaccagtttggcaggttgcttgggctcatcca
aaattcgggtctttacttgcttcctgttcttatgatgggcgtgtcatactgtggaaggaa
ggtaatcagaatgagtggacccaagctcatgtttttgatgatcacaaatcctctgtgaac
tcaattgcttgggctcctcatgaactcggtctttgtttggcgtgtggttcttctgatggg
aacatctcagttttcactgcaaggtctgatggtggctgggatacctcgaggatcgatcaa
gctcacccagttggtgtcacctctgtttcttgggctccctcaacagcccccggtgctctt
gttggttctggtctgcttgaccctgtccagaagctgtgttctggtggttgtgataacact
gtaaaagtgtggaagcttggtaatggcatttggaagctggactgctttccggctcttcat
atgcatgttgattgggtcagggatgttgcttgggcacccaacttgggactaccaaaatca
accattgccagtgcctcacaggatggtaaagtgattatatggaccgtgggcaaggatggg
gatcaatgggaaggtaaggtgctgcatgatttcaatgcacctgtttggagggtctcatgg
tcgctgactggaaacatattggctgtggctgatgggaacaacagcgtgacattatggaag
gaagcagtagatggggaatggcaacaggtgacaacagttgacccatag

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