KEGG   Malus domestica (apple): 103444036
Entry
103444036         CDS       T03194                                 
Name
(RefSeq) ubiquitin receptor RAD23b-like
  KO
K10839  UV excision repair protein RAD23
Organism
mdm  Malus domestica (apple)
Pathway
mdm03420  Nucleotide excision repair
mdm04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    103444036
  09124 Replication and repair
   03420 Nucleotide excision repair
    103444036
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:mdm03051]
    103444036
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103444036
Proteasome [BR:mdm03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    103444036
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      103444036
SSDB
Motif
Pfam: UBA XPC-binding ubiquitin UBA_7 Rad60-SLD CUE UBA_Ucp12 UBA_3 MmeI_C UBA_RAD5A Dsc3_N
Other DBs
NCBI-GeneID: 103444036
NCBI-ProteinID: XP_008381163
LinkDB
Position
09:complement(join(27748315..27748431,27748511..27748598,27748889..27748998,27749087..27749134,27749747..27749812,27749883..27750017,27750088..27750265,27751133..27751171,27751260..27751336,27751431..27751469,27753524..27753685,27754107..27754172))
AA seq 374 aa
MKLTVKTLKGSHFEIRVQPTDAVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA
DNKVTEHSFLVVMLSKSKTSGLTGSSYGQPASTNPSTTPPTTDTTTRTEAPIQAPPLQST
TSAPDTASAHSDTYGQAASTLVAGTNLEQTIQQIMDLGGGNWDRETVARALRAAYNNPER
AVDYLYSSIPETTEVAVPVGNFPASQATETGATNAAPVSGAPNSAPLNMFPQETLSGAGA
GALGSLDFLRNNRQFQALRSMVQANPQILQPMLQELGKQNPQLLRLIQEHHTEFLQLINE
PLEGSEGGIFDQPDGPDQDMPHAINVTPAEQEAIERLEAMGFDRALVIEAFLACDRNEEL
AANYLLENAGDYED
NT seq 1125 nt   +upstreamnt  +downstreamnt
atgaagctcactgtaaagaccctcaaaggcagccatttcgaaattagggttcagcccact
gacgccgttatggctgtgaagaagaacattgaggatgtacaaggaaaagataattaccca
tgtggacagcagttactgattcataatgggaaggtcttgaaagacgaaactacgttggct
gacaataaggtcacggaacacagttttcttgttgtcatgcttagcaagagtaaaacttct
ggcttaacagggtcttcttatggtcagcctgcctctacaaatccttctacaactccacca
accacagatactacaaccagaactgaagctccaatacaagcaccacccttacagagtacc
acatctgctccagacactgctagtgcgcatagtgatacctatggtcaagctgcttcaact
ttagttgctggcactaatcttgagcagactattcaacaaataatggatttgggaggtggc
aactgggacagagaaacagttgcacgtgccctacgagcagcttataacaatccagagcga
gcagtggactacttgtactctagtattccagaaacaacagaagttgcagttcctgtagga
aatttccctgcaagtcaggcaactgagacaggggcaaccaatgctgctcctgtctctgga
gcacctaactctgctcctttgaatatgtttcctcaggaaacactctctggtgctggcgct
ggggcacttggatccctcgacttccttaggaataatcggcagttccaagcactgcgctca
atggtgcaagcaaatccacaaattttgcagcccatgctgcaggagctcggaaagcaaaac
ccccagcttttaagattaattcaggagcaccatactgagttccttcagttaataaatgaa
ccgcttgagggttctgaaggtggcatatttgatcagcctgacggtcctgaccaagatatg
cctcatgccatcaacgtaacccctgccgagcaggaggccattgaacgtcttgaggcgatg
ggatttgacagagcgttggtcattgaggcttttctggcgtgcgatcgcaatgaggaattg
gcagccaattacctattggagaatgctggagattacgaggattga

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