KEGG   Malus domestica (apple): 103445474
Entry
103445474         CDS       T03194                                 
Name
(RefSeq) pre-mRNA-processing factor 39-1 isoform X1
  KO
K13217  pre-mRNA-processing factor 39
Organism
mdm  Malus domestica (apple)
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mdm03041]
    103445474
Spliceosome [BR:mdm03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    103445474
SSDB
Motif
Pfam: HAT_PRP39_N HAT_PRP39_C Suf TPR_14 HAT_Syf1_CNRKL1_N HAT_Syf1_CNRKL1_C TPR_16 NRDE-2 UTP6_C TPR_12
Other DBs
NCBI-GeneID: 103445474
NCBI-ProteinID: XP_008382719
LinkDB
Position
10:complement(join(29046675..29046779,29046856..29046969,29047107..29047415,29047766..29047915,29048055..29048135,29048530..29048646,29048737..29048889,29049629..29049772,29050262..29050625,29051282..29051449,29052057..29052286,29052971..29053074,29053732..29054173))
AA seq 826 aa
MADSETVVAQTSAVMGYTSAGYTSTGYADASSNIATDTGALHSEATPEFSNTPGGSNIGD
GNAYSADPNSLMQETQSYTAYETKPAVGVTDASGNVVSNENDALESSQVASYDSSMNGVI
ASGVGTVSSVDNGNAEPLDPQQFGDASAMSVEEDRLWNIVRANSLDFNAWTALIEETEKI
AQDNILKIRKVYDAFLAEFPLCYGYWKKYADHEARLGSIDKVVEVYERAVQGVTYSVDIW
LHYCIFAISTYGDPDTVRRLFERGLAYVGTDYLSFTLWDKYIEYEYMQQEWGRLAMIYSR
ILENPNQQLDRYWNSFKELAGSRPLSELRTAEEAAAAGGAHSEGIDKVNGEDVQSDGAEQ
SPKPVSADLTEAEELEKFITIREEVYKKAKEFDSKIISFETAIRRPYFHVRPLNSVELEN
WTSYLDFIEREGDLSKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDIANNALARATQ
VFVKRQPEMHLFAARFKEQSGDIPGAQAAYQLVQSELSPGLLEAIVKHANMEHRLGNVEA
AYSLYEQAIAIEKVKEHSQMLPMLYAQYSRFTYLVSLNAEKAREILDGALEHIQLSRAFL
ESMMVFETIQPLPKRIDHIDSLVVKFIEPSSESPNFASVADREELSGIYLEFVNLFGDAQ
SIKKAEDRHAKLFIPHRSSTSELKKRQAEDFLSSDKVKLAKAYSGVPSPAQSIMGAYPNA
QSQWPAGYGAQPQAWPPATQATQGQQWPAGYTQQPYNAYGGYGTAGYANPQAPVVAPQTA
AYGAYPSTYPAQQAVPPQSYAHPTVAAVAPAPQPASVPQAYYGSYY
NT seq 2481 nt   +upstreamnt  +downstreamnt
atggcagacagtgagacagttgttgctcaaacatctgcagtgatggggtatacatcagca
ggatatacttcaacggggtatgctgatgccagctcaaatattgctactgatacgggtgca
ttgcattctgaggctaccccagagttttctaatacacctggcggttctaacataggtgat
ggaaatgcatattctgcggatcccaattctctcatgcaagaaacacaaagttacacagca
tatgaaaccaaaccagctgttggagtgacagatgctagtgggaatgttgttagtaatgaa
aatgacgccttggagtcatctcaagttgctagttatgattcttctatgaatggtgttatt
gcttctggagtgggaactgtttcatcagttgataatggaaatgccgaacctcttgatcca
caacaatttggggatgcttctgccatgtctgtcgaagaagatagactgtggaacattgtg
agggctaattccttggatttcaatgcctggactgctttaattgaagagacagagaagatt
gcacaggataacatattgaaaattcggaaagtttatgatgcttttttagcagagtttccg
ttatgttatggttattggaaaaagtatgcggatcatgaggcacgtctaggttctatcgat
aaagttgtggaggtttatgaacgtgcagttcaaggtgttacctattcagttgatatctgg
ttgcattactgcatttttgctataagcacatatggagatccagacactgttagaaggctt
tttgagcgaggacttgcttatgttggaacagattacctgtcctttactctgtgggataag
tatatagaatatgagtacatgcagcaggagtggggccgccttgccatgatctattcacga
atattagagaacccaaatcagcaactggatcggtattggaacagctttaaggagttagct
ggaagtcggccactctcagaattgaggactgctgaagaagctgcagcagcaggaggtgca
cattcagagggtattgacaaagtcaatggggaagatgttcaatctgatggtgcagaacaa
tctcctaaacctgtaagtgctgacttaacagaagccgaggagttggagaagtttatcacc
attagagaagaggtgtataagaaagctaaagagttcgattctaagatcattagttttgaa
acagctattaggaggccctactttcacgtgcggcctctcaattctgtagagcttgaaaat
tggaccagttacctagactttatagaaagggagggcgacttgagcaaggttgtcaagcta
tatgaaaggtgcctaattgcttgtgctaattatcctgaatactggattcgatatgttcta
tgcatggaggccagtggaagtatggatattgccaataatgctcttgcacgtgcaacccag
gtttttgtgaagagacaaccggagatgcacctttttgctgctcgattcaaagagcagagt
ggggatatacctggtgctcaagctgcctatcaacttgtacaatctgaactctcgcctggt
cttcttgaagcaatcgtgaagcatgcaaatatggaacaccgtttgggaaatgtggaagct
gcctactctttatacgaacaggccattgccattgaaaaagtaaaagagcattcacagatg
ttacccatgttgtatgctcagtactctcggttcacttacctggtttctttgaatgcggaa
aaagctagagaaattttagatggagcactcgagcatatacaactgtcaagagcatttctt
gagtccatgatggttttcgagacaatacagccactgccaaagcgaattgatcacatagat
tcattggttgtgaagttcatagagcccagctcagagagccccaattttgctagcgttgca
gacagagaagagctatctggcatctatttggagtttgttaacctctttggagatgcacag
tctatcaagaaggctgaggatcgacatgctaagctcttcatacctcataggagcagcacg
tcagagttgaaaaaacgtcaagctgaggactttctatcttcagataaagtgaagctagct
aaagcttactctggtgttccatcgcccgcccagtcgatcatgggagcatatccaaatgca
cagagccaatggccagctggttatggtgcacagcctcaagcttggccaccagctacgcaa
gctactcagggacaacagtggccagctggttatacccaacagccgtacaatgcatatggt
ggttatggaactgctggctacgctaatccacaagcgcccgtggtggcgccacaaactgct
gcttacggtgcttatccttctacgtatcctgctcagcaggccgtcccgccacaaagttac
gcgcatccaaccgtggcagcagtagcaccggctccgcagcctgcttcagttcctcaggcg
tattatgggagttactactga

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