Malus domestica (apple): 103445520
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Entry
103445520 CDS
T03194
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103445520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103445520
Enzymes [BR:
mdm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
103445520
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103445520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
DUF6317
Motif
Other DBs
NCBI-GeneID:
103445520
NCBI-ProteinID:
XP_028965694
LinkDB
All DBs
Position
10:complement(join(25867141..25867784,25868371..25868559,25868662..25868776,25868858..25868974,25869080..25869192,25869276..25869458,25869676..25869806,25869919..25870250))
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AA seq
607 aa
AA seq
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MASLPPQIRRRFLSTTTTTTNVSRKWAVKEVTKSNYSESLEEFKNHLSSSDFVAVSLQKT
GSHRAPWLRPQPFDTVDTSYWKAKYAAERFQLLQFAACPFTLRASKLTLHPYNFVLFPRD
ELKMGMPTYSFSAQTSHLTSMAEEGFDFNACIYNGISYLSRAQESAAKVRIGNPAASSCV
TNTSSTHTIADTVFVERIKSRVTHWKTAFKSTKKDDALLSSLRKIVMRSEMCGTRPCMDL
DVCSERQVQLALEMLKEFSDDLVPLIIPARGGGTQAVRVVLTSSKEDRELFERELQNLEE
EQNKRVRGFREVIDLISASQKPVVSHNSLNDFTVIHSEFLSPLPTNVDEFVGSLRSVFPH
ILDVSHLMKNIPAAISYLNNHYFTPIDMEISPQENEGNIHNLCVVKMCYFFAKLCSILKI
SENAMVSNNALLDPALEEYTNISNPCSDNPQESTNGDIRVWTKNMRKVSCDHLVFLWGFR
NGMTAGMLKSLLHKSHAVFSEEFDVRLVDKSCAIVVFWQPALSQTFLDAVSSEEICDSLR
EIVSEGLRASNYETYNRVCRLGLWEADLAESMDKALEDSDCLMEANSSTYSKDIYWSSDS
TINFDDL
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctctgcctccacaaatacggcgccgttttctcagcaccaccaccaccaccacc
aatgtctcaaggaaatgggccgtgaaggaagtgacgaagtccaattattccgagtccctg
gaggagttcaagaaccacttgtccagttccgacttcgtggccgtctcgctgcagaaaacg
gggtcgcatcgtgcgccgtggctccgcccccagcccttcgacaccgtcgacacgtcgtat
tggaaagccaagtacgccgccgagcggttccagcttctccagttcgccgcctgccctttc
actctcagagcctctaagctcacccttcacccatacaactttgtattgttcccaagggat
gaattgaagatggggatgccaacttatagcttttcagctcaaacatcacatttgacttcc
atggcggaagaaggttttgatttcaatgcctgcatatataatggtatttcgtacttgtct
agagcacaggaatctgcggctaaagttcggatagggaatccggccgccagcagctgtgta
acgaacacttcttcgacccataccattgctgatacagttttcgtagaaagaattaaatcg
cgagttacgcattggaaaactgcattcaaaagcacaaagaaagatgatgctctgttgagt
tccttaagaaaaattgtaatgcgaagtgaaatgtgcggaacaagaccttgcatggatcta
gatgtttgtagtgaacgtcaagtccagcttgcactggagatgttgaaggagttctctgat
gaccttgttcctttaataatcccagcaaggggcggaggaactcaggctgttcgtgttgtt
ttgacaagttctaaagaggacagggaattgtttgagagagagcttcaaaacctcgaggag
gaacagaacaagagagttcgtggatttcgagaggtgatcgatttgatttctgcttcacag
aaacctgttgtctcccacaattcccttaatgatttcacagttattcattcagagtttctc
tctcccctgccgactaatgtagatgagtttgtgggttccttgcgctcggttttcccccac
atacttgatgtcagccatctgatgaagaatattcctgcagctatttcatacttgaataat
cattacttcacacccattgatatggaaatttcgcctcaagaaaatgaaggcaacattcat
aatctttgtgttgtgaagatgtgctacttttttgcaaagctctgctccattctgaaaatt
tccgaaaatgctatggtatctaacaatgcactgttggatccagccctcgaagagtataca
aacatttccaatccgtgttctgacaacccccaagaatcaaccaatggggatatcagagtc
tggacaaagaacatgagaaaggtcagctgtgatcatttggtattcttatggggattcaga
aatgggatgactgcggggatgctcaagagcttgttgcacaagtcacatgccgtcttctct
gaagaatttgatgttcggttagtggataagagctgtgccattgttgttttctggcaacct
gctttatcccaaacttttctggatgccgtcagtagtgaagagatttgtgattctttaagg
gagattgtttcggagggcctaagagcatcgaattatgaaacttacaatagagtctgcagg
ttaggcttgtgggaggcagatttagcagagtccatggacaaagccttggaagactcggac
tgccttatggaagctaattcatctacatattctaaagacatttattggtctagcgactca
acgattaattttgatgacttgtaa
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