KEGG T03194: 103445590

Malus domestica (apple): 103445590

Entry

103445590         CDS       T03194

Name

(RefSeq) BRCA1-associated RING domain protein 1

K10683

BRCA1-associated RING domain protein 1

Organism

mdm Malus domestica (apple)

Pathway

mdm03440

Homologous recombination

Brite

KEGG Orthology (KO) [BR:mdm00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    103445590
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103445590
   04121 Ubiquitin system [BR:mdm04121]
    103445590
   03036 Chromosome and associated proteins [BR:mdm03036]
    103445590
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103445590
Messenger RNA biogenesis [BR:mdm03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     103445590
Ubiquitin system [BR:mdm04121]
Ubiquitin ligases (E3)
  Multi subunit type E3
   BRCC complex
    103445590
Chromosome and associated proteins [BR:mdm03036]
Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     103445590
DNA repair and recombination proteins [BR:mdm03400]
Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-core complex
     103445590

SSDB

Motif

Pfam:

BRCT zf-HC5HC2H BRCT_2 zf-HC5HC2H_2 zf-RING_UBOX zf-C3HC4_4 zf-C3HC4_2 PTCB-BRCT zf-C3HC4 zf-C3HC4_3 Prok-RING_4 PHD_NSD zf-RING_5 zf-RING_6 zf-RING_2 RTT107_BRCT_5

Other DBs

NCBI-GeneID:

103445590

NCBI-ProteinID:

XP_008382823

LinkDB

Position

10:complement(join(29428314..29428658,29429028..29429146,29429324..29429489,29430182..29430269,29430474..29430550,29430721..29430907,29431433..29431533,29431628..29431864,29431967..29432409,29432519..29432614,29432858..29432913,29433032..29433085,29433228..29433379))

AA seq 706 aa
MQRSLSFRTFVSMADPNPNPKCSDSSSTRSTMNPWVLHFQKLGLELKCPLCLNLLNRPTL
LPCNHIFCNSCIPSSSCPVCKAEVADRDLRPVPFMENIVAIYKSLDASFCTNLLQPVSSD
VRTILEQNPISPNISFAGTIAKEPFDNDQGGNSNSGHSIYSSSAHERVWAPCSLNRSVAD
GVGKNGKVKNCSMPIDANGKVLDFARSGLGNPNSQLPSSHIRAGGLEECMTVERDMNHAA
QSLPNSPPSFGDAKCSDNDSCGRRCEQISENSLVRRSISNIDDSRVGQKRHDSCATEIDG
HLRKKIKYEPVSETYSELEYKFSTAPNESFTKRTICAFCQSSTISVVTGPMLHYSKERMV
EGDEANASNVIHVHKICIDWAPQVYFEGENVKRLKAEVLRGAKLKCTKCGLKGAALGCFV
KSCRRSYHVTCAIEISKCRWDKENFLLLCPAHCSTKFPSEKSNYGKPKMCPPSNSVEVLD
KVNQWIMCPSGLSSEEKLLLIKFAEKIGATVSKTWRPDVTHVIAALDGDGAYVRTFKTCM
AILAGRWILKIDWVKACMEATDHVNEEPYEVSLDNYGCCDGPKTGRLRATNNDPKLFNGL
SFYFAGDFVLDRKEDLQDLIIAAGGTVFNSSEEVLERSCLEQTASRTLVVYNLDPPEGCK
LGEEVSILWQRSNEAQDIAAKIGSQIIGHTWLLESIARCKLQPFVC

NT seq 2121 nt +upstreamnt +downstreamnt
atgcaacgctctctgagtttccgaaccttcgtttcaatggcggaccctaaccctaaccct
aagtgcagcgacagtagcagtaccaggtcgacgatgaacccgtgggttcttcattttcag
aaactgggcctcgagctcaagtgcccgctctgcttgaatttgcttaatcggccgacatta
cttccatgcaatcacattttctgcaattcctgcatacccagttcgagttgccctgtttgt
aaagctgaggttgcggatcgagatctcaggcctgtgccattcatggaaaacatagtagcc
atctataaaagcttggatgcgtctttctgcaccaatttgttgcagcccgtttcttctgat
gttagaaccattttggaacaaaaccccatttcgcctaatatcagttttgctggcacaatt
gctaaagaaccatttgacaatgaccaaggcggtaattcaaacagtggacattccatctat
tcgtcgagtgctcatgaacgagtttgggctccttgtagtctaaatcgttctgttgctgat
ggagttggcaagaatggcaaagtaaaaaactgtagcatgccaatagatgctaatggcaag
gtattggattttgctagaagtggattgggaaatcccaattcacaactaccgagttctcat
ataagagctggtggactcgaagagtgcatgactgtagaaagagatatgaatcatgcagca
cagtcattgcccaacagtcctccttcatttggtgatgccaaatgttcagataatgatagc
tgtggtcggcgctgtgagcaaatttcagaaaattctttggtcaggagatcgatcagcaac
attgatgatagtagagtagggcagaaaaggcatgatagttgtgcaactgaaattgatggt
catttaagaaagaaaataaagtatgagccagtttcagaaacttattctgagctcgaatat
aagttcagtacagctcctaatgaatcattcacaaagagaacaatttgtgcattttgccag
tcttccacaatctcagtggttacagggccaatgttgcattattctaaagagagaatggta
gagggagatgaggcaaatgcttcaaatgttatacatgttcacaaaatatgcattgattgg
gcaccgcaagtgtattttgaaggtgaaaatgtaaagagattgaaggcagaagtgttaagg
ggtgcgaagctaaaatgcaccaaatgtgggctaaagggagcagctttgggatgctttgtg
aagtcctgccggagaagctatcatgttacctgtgcgattgaaatttctaaatgtcgttgg
gacaaggaaaactttctgctgctctgtccagctcattgttcaactaaatttcccagtgag
aagtcaaattatgggaagcccaaaatgtgtccgccatctaacagtgtggaagttctagat
aaagtgaatcaatggatcatgtgcccatccggtttgtcttctgaagagaagcttctttta
atcaagtttgccgagaagattggtgcaactgtgtccaagacctggagaccagatgttaca
catgtgattgcagccctggatggggatggtgcatatgtgaggacattcaaaacttgcatg
gccattttggctggaagatggattctgaaaattgactgggtaaaagcatgcatggaagcc
acagatcatgtgaatgaagaaccatatgaagttagtcttgataactacggatgctgtgat
ggcccaaaaactggcaggcttcgggcaacaaacaacgatccaaagctctttaatggtttg
agtttctattttgctggtgattttgtactggatagaaaggaagatcttcaagatttgatc
attgcagcaggaggcacagttttcaacagctcagaagaagtgctggaacgaagttgtctt
gaacagactgcttcaaggacgctagttgtgtacaacctcgacccaccagaaggatgtaag
ttgggggaagaagtttcgatcctttggcaacggtcaaatgaggcccaggatatagctgca
aaaattggatcacaaatcatcggtcacacatggctcttggaatcaattgcgagatgcaag
ttacagccttttgtctgttga

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