Malus domestica (apple): 103445786
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Entry
103445786 CDS
T03194
Name
(RefSeq) serine/arginine-rich splicing factor SR45 isoform X3
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
mdm
Malus domestica (apple)
Pathway
mdm03013
Nucleocytoplasmic transport
mdm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103445786
03015 mRNA surveillance pathway
103445786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103445786
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103445786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
103445786
NCBI-ProteinID:
XP_008383052
LinkDB
All DBs
Position
10:join(32062337..32062551,32063148..32063213,32063666..32063763,32064297..32064343,32064424..32064504,32064598..32064757,32064844..32065063,32065161..32065214,32065933..32066046,32066849..32066912,32066993..32067024,32067477..32067540)
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AA seq
404 aa
AA seq
DB search
MAKPTRARRSPSGSASGSSSRSRSRSRSFSGSDSHSSPLSRSRSRSRSFTSSSSPSRSGS
SRSRSPPASRKNPEVAKRGRSPPPQSKRASPPPRKASPVHAVHESLVLHIDALTRNVHEG
HLREIFCNFGEVVNVELAMDRTVNLPKGFGYVEFKIRADAEKAQLYMDGAQIDGNVVRAK
FTLPQRQKVSSPPKPVATAPKRDTVKTDGVSADKDAPKRPREASPRRRGALSPRRRSPVS
RRGESLRRALDSPPRRHAASPARPYCRGGSPPRRRLASPSRGRSGSPPPRRRSPIRRIQG
SPIRRRSPGPPRRGSPTRRFRSPPRRSPIRRRTRSPIRRPGRSRSRSISPRRGRAPATRR
GRSSSSGSPSPRQVPRKISHSPRRPLRGRSSSKSSSSSSPPRKP
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccaacccgagcccgtcgctcgccgtcaggctccgcatccggctcatcctcc
cgctcccgctcgcgttcccgctccttctcaggctccgactcccactccagcccgctttct
cgctcccgatctcgctccaggtccttcacctcttcctcctctccgtctcggagtggcagc
tctcgcagccgtagcccccctgcctccagaaaaaatcctgaagttgctaaacgaggtcgt
tctccaccgccacaatctaaaagggcatctccacccccaaggaaagcttctccagttcat
gcagttcatgagtcacttgttcttcacattgacgcactaacaaggaatgtgcatgaaggc
catttacgagaaatattctgtaactttggtgaagttgtcaatgtggagctggcaatggat
cgtactgttaatcttccaaaaggatttggatatgttgagttcaaaatacgagcagatgct
gaaaaagcacaattatacatggacggtgctcaaattgatggtaatgtcgttcgagcaaag
tttacattacctcaacgtcagaaggtgtcttctccccctaagcctgttgccactgctcca
aagagagacactgtgaaaactgatggtgtcagtgctgacaaagatgcaccaaagcgaccg
agggaagcttctcctcgtcggagaggtgctctctcaccacgaaggagatcacctgtatct
cgaagaggtgaatctctaagacgagcattagattctccaccgcgtcgtcatgctgcctca
cctgcgcgtccctactgccgtggtggttcacctccaaggaggaggcttgcatctccatcc
agaggtcgttctggatcaccgccaccaaggcgacgttcccctattagaaggatacaagga
agtcccattcgtagacgctctccaggacccccaaggcgtggttcacctactagacggttt
cgtagccctcccagaaggtctccaattcgtaggcggacccgttctcccattcgtaggcct
ggtcgatcacgttcaaggtcaatctcgccgcggagaggtcgagcaccggctactagacgt
gggaggtcatcgtcatctggatcacctagtccacgacaggtaccccgaaaaatctctcat
agtccaagaaggcctttgaggggaagaagcagtagcaagagcagcagcagcagttcaccc
cctcgtaagccatag
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