Malus domestica (apple): 103445792
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Entry
103445792 CDS
T03194
Name
(RefSeq) protein PAT1 homolog isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mdm
Malus domestica (apple)
Pathway
mdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103445792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103445792
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103445792
mRNA degradation factors
5'-3' decay
Decapping complex
103445792
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
TFIIA
Motif
Other DBs
NCBI-GeneID:
103445792
NCBI-ProteinID:
XP_008383066
LinkDB
All DBs
Position
10:complement(join(32027060..32029260,32029761..32029824,32031563..32031613,32031803..32031933,32032592..32032679))
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AA seq
844 aa
AA seq
DB search
MEGFESRDSNQEAASSIPQDLNHLQLNSSGEVFDASQYAFFGKDSVGEVELGGLDEEEEA
PVDEEEFLYNRQEGDISLSDIDDLSLTFEKLHKDVSGPRSAGVIGDRGSRESSSAAEWAQ
EHFPNWIDEEILDAESTEGGKRWSSHPYSSAHPAELMPPLCRTSSYPEPQQQQLQQLQQQ
HHQHFSSEPILVPKSVFTSYPPPGGRPQQASPNRQASHLNPYLSGGPRGGLSSPNLSPYS
SSQLQLNGLPHGSHFGGNLPQLNPGLSNSRPQKQRANQSGVYGDHPGLMNNLLQQQLAHQ
NGLMPPQLMHQQQSQPLAHQNGLMPPQLMHQQQSQPQDPRLHHPVQPPFNHLPAMQSQLF
NPHLSASPPLMSKFEAMLGMGDLGDQGPKLAQKGRPNMRFSQHGFDTASHRREGGWPQFR
SKYMTAEEIENILRMQLAATHSNDPYVDDYYHQFCLARKSAGAKLKHHFCPTQLRDLPPR
ARANTEPHAFLQVDALGRVPFSSIRRPRPLLEVEPPNSSSPGNTEQKVSEKPLEQEPMLG
ARVAIEDGLCLLLDVDDIDRFLQFNQLQDGGTQLRRRRQALLEGLAGSLQLVDPLGNNGP
TVGLHKDDLVFLRLVSLPKGRKLLAKYLQLLFQGGELMRVVCMAIFRHLRFLFGSYPTDP
GAIETTSVLARVVSSCARGMDLGALSACLAAVVCSSEQPPLRPLGSPAGDGASLILNSVL
ERATELLTDPHAASNYNMTNRQLWQASFDEFFGLLTKYCVNKYDTVMQSLLTQAPPNVTV
IGSDAARAIGREMPVELLRASLPHTDEHQRQLLLDFTQRSMPIGASNSRDGGNGAHMNSE
SVLS
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atggaggggtttgagagtagggatagtaatcaagaggctgcctcttctatccctcaagat
ctcaaccatttgcagcttaattcctcaggagaggtatttgacgcatcacagtatgcattt
tttggtaaagattctgttggggaagttgagttgggaggtttagatgaagaagaggaggct
ccagtcgatgaggaggagtttctatataatagacaagagggtgacatatctctatctgat
attgatgacctatcattaacctttgaaaagttacacaaggatgttagtggacctaggagt
gctggagtaattggtgatagaggatccagagaaagttcatctgccgctgagtgggcgcag
gagcatttccctaactggattgatgaagagatacttgatgctgaaagcactgagggcggg
aaacgatggtcttcacacccatattcttcagctcatcccgcagagttgatgccgcctttg
tgcagaacttcttcatatcctgagccccaacaacagcagctacagcagctacagcagcag
caccatcaacatttttccagtgaaccaattctggtgccgaaatcagttttcacttcttat
ccgcctcctggtggcagacctcagcaggcttcgccgaaccgccaagcaagccacctgaac
ccatatctttctggtggaccccgggggggattatcttcaccaaatctatctccttactct
agttctcaacttcaactgaatggattacctcatggatcacattttgggggaaatttgcct
cagcttaaccctggcctgtctaatagccgaccccaaaagcaacgggccaatcaaagtggt
gtttatggagatcatcctggtcttatgaacaatttgttgcaacaacagctagctcatcag
aatggtttaatgcctccacaattgatgcatcagcaacagtcacaaccactagctcatcag
aatggtttaatgcctccacaattgatgcatcagcaacagtcacaacctcaggaccctaga
ctgcatcatccagttcagccaccgtttaatcatttgccggcaatgcagtctcaactattt
aacccccatctttctgcatccccgcccttgatgagcaagtttgaagcaatgcttggtatg
ggtgatcttggagatcaagggccaaaattagctcagaaaggtagaccaaatatgcgtttt
tctcaacatggatttgatacagctagccacaggagggaaggtgggtggccacaatttagg
tctaagtatatgacagctgaagaaattgaaaatatactccgaatgcagctagctgcgaca
cacagcaatgacccatatgtggatgattactaccaccagttttgccttgcaagaaaatct
gctggggccaagttgaaacaccatttctgcccaactcaattaagggatcttcctcctcga
gcacgagctaatactgaaccacatgcttttctccaggttgatgctcttgggagggtcccc
ttttcctcaatacgtaggcctcgccctcttcttgaagttgagcctccaaattcatctagc
cctggcaacactgaacaaaaggtttctgagaagccgctagaacaggagccaatgcttggt
gctagggttgcaattgaggatgggctttgtcttctcctggatgtggatgacattgatcgt
tttctgcaattcaatcaactccaagatggtggaacccagttgaggcgtaggcggcaggcc
ttgcttgaaggacttgcaggatctcttcaattggttgacccactcgggaacaatggcccc
acagttgggcttcataaggatgatcttgtatttctaaggttagtctcacttcccaagggc
cggaagctcctggcaaagtacctgcagcttttatttcaaggtggtgagctcatgcgagta
gtctgtatggccatctttcgtcatttaaggttcttgtttggtagctaccctactgatcca
ggggctatagaaactacaagtgttcttgcaagggttgtttcatcatgtgctcgaggtatg
gaccttggtgcacttagtgcctgtcttgcagcagtggtttgttcctcagagcaacccccc
cttcgcccccttggaagccccgcaggagatggggcctctcttatcctcaattcagttctt
gagagggcaactgaactcttaactgatcctcatgctgcaagcaactacaatatgaccaat
cgccaactttggcaggcctcctttgatgaattctttggccttctgaccaagtattgtgta
aataaatatgatacagttatgcagtcactgctaactcaggcccctccgaatgtgactgtt
attggctcagatgcagccagagctattggtcgtgaaatgcctgttgagctgttgcgtgct
agccttcctcacactgatgagcatcagagacaactgttgttggacttcacgcagcggtct
atgcccataggagcatctaacagtcgtgatgggggaaatggtgctcacatgaattcagag
tctgtgctgagctga
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integrated database retrieval system
