Malus domestica (apple): 103445960
Help
Entry
103445960 CDS
T03194
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103445960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mdm03041
]
103445960
Enzymes [BR:
mdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103445960
Spliceosome [BR:
mdm03041
]
Complex C
Other components
Step II factors
103445960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SLFN-g3_helicase
Flavi_DEAD
AAA_30
AAA_24
T2SSE
nSTAND3
AAA_16
SRP54
ATPase
ABC_tran
Sigma54_activ_2
AAA_7
AAA_33
Motif
Other DBs
NCBI-GeneID:
103445960
NCBI-ProteinID:
XP_028965109
LinkDB
All DBs
Position
10:complement(34177534..34180923)
Genome browser
AA seq
1129 aa
AA seq
DB search
MEQKNSSGGRGLYVSGKDRVVFRRPGKKSVLGFDVHANAKREGFGGGDGGFEAPRDCEGR
YDYDREEHGSRRRDCKDGSGSYGKDSCRRRKASDGYEHDQCGGQYGRKRSRCNFSGSDAS
PWDLISSSPVRICPSGDAVKFSSSKHGVSSRKVAFHSENSQSFKDGEGDMADLDEGQKYE
ISESMRLEMEYNSDRAWYDREEGNIMFDTVDSLSLFYGDDASFQKKEAELAKRLVRRDGT
KMTLAQSKKLSQLTADTARWEDRQLIRSGAVRGTGLQTELDDEEEHKVILLVHDTNLKPP
FLEDSVIGKDGTAVFTRRAETIMPIKDSTSDMAIISRKGSALVRKIHEKQTMNKSRQRFW
ELAGSKLGDILGVEKTAEQIDADTAAAGADGEIDFKEDAKFAQHMKDGEAASEFAKSKTI
SQQRQFLPIYSVRDDLLQVIRENQVIVVVGETGSGKTTQLTQYLHEEGYTVNGIVGCTQP
RRVAAMSVAKRVSEEMETELGDKVGYAIRFEDVTGPNTIIKYMTDGVLMRETLRDSDLDK
YHVVVMDEAHERSLNTDVLLGILKTVVARRRDFKLIVTSATLDAQKFRNLFGSAPIFEIP
GRTFPVSIRYSKTPCEDYVEAAVKEAITIHITGTQGDILIFMTGQDEIEAACYALSERME
QIISTSVKEVPKLLILPIYSQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGISYV
IDTGYGKMKVYNPKMGMDALQVFPISQTAASQRAGRAGRTKPGTCYRLYTENAYLNEMLP
NPVPEIQRTNLGYVVLLLKSLQVDKILDFDFVDPPPKDNILHSMYQLWVLGALNNEGRLT
DLGWKMVELPLDPPLAKMLLMGEKLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREK
FSFPESDHLTLYNVYQQWERHQCRGDWCDDHFLQVKGLRKVREVRSQLLEILKTLKVKVP
LTSCWPDTDKVRQAICSAYFQNAARLKGVGEYVNCRTGMPCYLHPSSALYGMGCNPEYVV
YHELVLTRKEYMQCATAVEPQWLAESGPMFYYVKESDNSMLEHKKRQKGEKTAMQAEMEN
LRRARAEAEKASKQKEREKRSKQQQQQVVPMLGSHQGSSAYLRPKKLGL
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaaaaaatagcagtggtggtcggggattatatgtttcagggaaggacagagtt
gtttttaggcgtccggggaagaaatctgtcttgggtttcgatgtccatgctaatgcgaaa
cgggaagggtttgggggcggtgatggcggattcgaggcaccgagagattgtgagggtagg
tatgattacgacagggaagagcatggtagtaggaggagagattgcaaagatggtagtggt
agttatggtaaggattcttgtcgtcgaaggaaagcaagtgacgggtatgaacatgatcaa
tgtggtggacaatatggaagaaagcggagtagatgtaatttttctggttctgatgcttct
ccgtgggatctcatctcatcgtctccagttcgaatttgtccttctggagacgcggttaaa
ttttcaagttcgaaacatggtgtgagttctcgtaaagttgcctttcactcagaaaattca
caatcattcaaggatggagaaggagacatggctgatttggatgaaggacagaaatatgag
ataagcgaaagcatgcgtctagagatggaatacaattctgaccgagcatggtatgatagg
gaagaaggaaacataatgttcgatacagttgatagcttatctttgttttacggagatgat
gcttcttttcaaaagaaggaagcagagttggcgaaaagattggttcgaagagatggaact
aagatgacccttgctcagagcaaaaagttgtctcagctcactgctgatactgcgcggtgg
gaggatcgtcaacttataagatctggtgctgttagagggactgggttgcagactgagctc
gatgatgaagaagagcacaaagttattcttcttgtacatgatacaaatttaaagcctcct
ttccttgaggacagtgtaattggaaaggacggaactgctgtttttaccaggcgagcagag
acgataatgccaataaaggattccacatccgatatggccataatttctcgcaaagggtct
gctctcgttaggaaaattcatgagaagcaaactatgaacaaatcgcgtcaacgtttttgg
gagcttgcaggttctaaactaggcgatatccttggtgttgagaaaacagcggagcagatt
gatgcagatactgctgctgctggtgcagacggtgaaattgatttcaaagaagatgcaaag
tttgcacagcatatgaaggatggggaagcagcgagtgaattcgcaaagtcaaaaaccatc
tcacagcaacgacagtttttgcccatatattctgtgagggatgatttactacaggtaatt
cgagaaaatcaagttattgttgttgttggagaaactggttctggaaagacgactcaactg
acacagtatctgcacgaagagggttacactgtaaacggcattgtgggttgcacgcaacca
agacgtgtggcagccatgagtgttgcaaagagagttagtgaagagatggagactgagctt
ggtgataaagttgggtacgccattcgttttgaggatgtgaccggaccaaataccataata
aagtacatgactgatggagtacttatgcgcgaaacacttagagactctgatcttgacaag
tatcacgtagttgtgatggacgaagcccatgaaaggtcactgaacacggatgtgctgctt
gggattttgaaaacagtggttgcccggcggcgtgattttaagcttatcgtgacatctgca
acactagatgctcagaagtttagaaacctttttggaagtgcaccgatttttgaaattcct
gggagaacatttccagtaagtatcaggtatagtaaaaccccatgtgaagattatgttgaa
gctgcagtgaaggaagccataactattcacatcactggcactcaaggtgacatcctcatc
ttcatgaccggccaggatgagatcgaggcagcttgttatgccctttcagagcggatggaa
caaattatctccacctcggttaaagaggtgccaaaactcttgatactccctatatattca
cagttgcctgctgacttgcaagcaaagatattccaaaaagctgaagatggggctcgtaaa
tgtattgtggcaaccaacattgctgagacatctttgacggtagatggaatctcatatgtc
atcgacacgggatatggtaaaatgaaagtatacaaccccaaaatgggtatggatgctctt
caagtatttcctattagtcagactgctgctagccaacgtgctgggcgtgctggcagaact
aagcctggaacatgttatcggctgtacacagagaatgcgtacttaaatgaaatgctgcca
aatcctgtgccagagatccagaggaccaacctcggatatgtggtcttgttgctcaaatca
cttcaggttgataagatactagattttgatttcgtagacccaccgcccaaggataatatt
ctccattctatgtaccagttgtgggtgttgggtgctcttaacaatgaggggcggttaact
gacctgggctggaaaatggtggaattgccgttggaccctccactcgctaaaatgctattg
atgggtgaaaagctaggatgtttagatgaggttttgacaattgtgtccatgctttcagtg
ccgtcggtattctttaggcccaaagatagggcagaggagagtgatgctgcaagggagaaa
ttctccttcccagagtccgaccacttgacactgtacaatgtttatcagcagtgggaacga
caccagtgtcgtggggactggtgtgatgaccactttttgcaagttaaagggctgcgaaag
gttagagaggtgaggtcccaactcctagagatactaaagacactcaaggtcaaagtccca
ctcacatcctgttggcctgatactgataaggtgagacaagctatttgctccgcgtacttt
cagaatgcggcaagactaaagggtgtgggggagtatgttaactgccggactggaatgcca
tgctatttacacccgagcagtgcgctttatggcatgggctgcaatccagagtatgtggtc
tatcatgagttagttttgacaaggaaggagtatatgcagtgtgccactgcggtggaaccg
caatggttggctgagtccggacccatgttctattatgtgaaggagtcggataactcaatg
ttggagcacaagaagagacaaaagggggaaaagacagcaatgcaggcggaaatggagaat
ctgagaagggctcgagcagaggcagagaaagcaagcaagcagaaggagagggaaaagaga
tccaagcagcagcagcagcaagtcgtcccaatgctgggttcgcaccagggctcttctgca
tacttgaggccgaagaaacttggcttgtaa
DBGET
integrated database retrieval system
