KEGG   Malus domestica (apple): 103446412
Entry
103446412         CDS       T03194                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03020  RNA polymerase
mdm03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    103446412
  09124 Replication and repair
   03420 Nucleotide excision repair
    103446412
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mdm03021]
    103446412
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103446412
Enzymes [BR:mdm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     103446412
Transcription machinery [BR:mdm03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     103446412
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      103446412
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 MRNIP
Other DBs
NCBI-GeneID: 103446412
NCBI-ProteinID: XP_008383740
UniProt: A0A498IVF2
LinkDB
Position
10:join(39975769..39976017,39976559..39976780,39976877..39977167,39977263..39977460,39977547..39977698,39977776..39977896,39977981..39978025,39978104..39978314,39978746..39978822,39978923..39979030,39979114..39979230,39979514..39979669,39979748..39979852,39979960..39980085,39980172..39980249,39980344..39980439,39980537..39980652,39980736..39980805,39980889..39980942,39981038..39981184,39981273..39981572,39981666..39982088,39982213..39982332)
AA seq 1193 aa
MEEEHEYDDQQYMEDDDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD
ESADIEIRPESQHNPGHQPDFAETVCKISFGQIYLSKPMMTESDGETATLFPKAARLRNL
TYSAPLYVDVSKRMIKKGHDGEELTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL
GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS
TMFVRMLARTSSKGGSSGQYIKATLPYIKGEIPIIIVFRALGFVADKDILEHICYDFSDT
QMMELLRPSLEEAFVIQNQQVALDYIGKRGANVGVSRDKRIKYAKEILQKEMLPHVGVGE
FCETKKAYYFGYIVHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRNLFRKLTKDV
RAYAQKCVDNGKDLNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA
STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS
AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVRTLRKLRRRVDV
NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKRDIHALQQRESPEDAGWHDL
VAKGYIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIP
FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL
PAGINAIVAISCYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP
DRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPMAQDEAPGQATSRYTRRDHS
ISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED
MPWTVEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA
LHSCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP
AEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNS
FECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTKDIKPAKNQKKKGG
NT seq 3582 nt   +upstreamnt  +downstreamnt
atggaggaggagcacgagtacgacgatcagcagtacatggaggacgacgacgaagacgaa
atcacgcaggaggacgcgtgggccgtcatctctgcctacttcgaggagaagggcttggtg
cgccagcagctcgactcgttcgacgagttcattcagaacacaatgcaggagattgtcgac
gagtcggccgatatcgagattcggcctgagtcgcagcacaacccggggcaccagcctgat
ttcgccgagactgtatgcaagattagctttggtcagatttatttgagtaagcccatgatg
accgaatctgatggagaaactgcaaccttatttcccaaagctgcaaggctgagaaatctg
acgtactcagcacccttgtatgtggatgtctcaaagaggatgataaagaaaggacacgat
ggcgaagaactcaccgagacccaggatttcaccaaagtattcattgggaaggttcctata
atgcttcggtctagttattgcacactgtaccagaattcagagaaagatttaactgagctg
ggagagtgtccatacgatcaaggtggatattttattataaatgggagtgaaaaggttctt
attgctcaagagaagatgagcaccaatcatgtctatgtgttcaagaagaggcagccgaac
aagtatgcctatgtggctgaagttcggtctatggcggagtctcaaaacaggccgcccagt
accatgtttgttcggatgcttgcccggactagttctaaagggggttcttcgggacagtat
atcaaagctacacttccttatattaaaggggaaattcctattatcatcgttttccgggct
cttgggtttgttgccgataaagacatcctcgagcacatatgttatgacttttctgatact
caaatgatggagttgctcagaccttctttggaagaagcatttgtgattcagaatcaacag
gttgcattagattatattggaaagagaggtgcaaatgttggtgtaagtagagacaagaga
atcaagtacgcgaaagagattctacaaaaggaaatgcttccacacgttggtgttggagaa
ttttgtgagacaaagaaagcttactattttggatatatcgttcacaggcttctactctgt
gcacttggtcggaggccagaggatgacagggatcattatggaaacaagcggcttgatctt
gctggtcccttacttggaggcttgtttagaaatctattcaggaagttgactaaggatgtg
agagcttatgcacagaagtgtgttgacaatggaaaggatcttaatctgcaatttgccatc
aaagctaaaaccatcacgagtggcctcaaatattcacttgccactggaaactggggacaa
gcaaatgcagctggtacaagggctggagtgtcgcaggtgttaaatcgtttgacatacgca
tccaccctctcacacttgagaagactgaattctccaatagggcgtgaagggaaattggct
aaaccacgtcagctgcataattcgcaatggggaatgatgtgcccagctgaaacacccgaa
ggccaagcatgcgggcttgtcaagaatcttgcgttgatggtatacataacggtaggatca
gctgcatatccaatcttggaatttttggaagaatggggtacagaaaactttgaggaaatt
tcacctgcggttataccccaagctacaaaaatttttgttaacggctgttgggttggaatc
catcgtgatcctgaaatgttggtgagaacattaagaaagctaaggcgacgggttgatgtc
aacactgaagttggggttgtgagggatatccgtctgaaagaattgcggatatatactgac
tatggccgttgcagtcgtccattattcattgtggacaaacagaggcttctcataaagaag
cgagatattcatgcattgcagcagagggaaagccctgaagatgctggttggcatgacctt
gtagcgaagggatatattgaatatattgacactgaagaagaggagactacaatgatttcc
atgacaattaatgatcttgtccaagcaagactcaatcctgaggaggcatattcggacact
tatacacattgtgaaatccacccatcacttattttgggtgtttgtgcttctattatacca
tttcctgatcataatcagtctccacgtaatacgtatcaatctgctatggggaagcaagct
atggggatttatgtcaccaattatcagttccggatggatacattggcgtatgttttatac
tatcctcagaaaccacttgtcaccacacgagccatggagcatctccacttccggcagctt
cccgctggcatcaatgctattgttgccatttcctgttattccggttataaccaggaagat
tctgtcattatgaatcaatcctctgtggaccgtggattcttccggtcactattctttcga
tcttatagggatgaggagaaaaagatgggaacccttgtcaaagaggattttgggcgtcct
gacagagcaaatactatgggtatgcgacatggttcttatgacaaattggatgatgatggt
cttgctcctcctggaactagggtttcaggtgaggatgtcatcataggaaagaccacaccc
atggctcaggacgaggctccagggcaagcgacatcgcgttacacgcggcgtgaccacagc
ataagcttgcgccacagtgaaaccggcatagttgatcaggttctactgacgaccaatgcc
gatgggttgcggtttgtcaaagtaagggtgaggtcagtcagaataccgcagattggtgac
aaattcagtagcagacatggacagaaggggacagtgggcatgacttatacgcaggaagac
atgccatggactgtggaaggggtcacacctgatataatcgtgaacccacacgctattccg
tctcgtatgacaattggtcagctgattgagtgtatcatggggaaggttgcagctcacatg
ggaaaggaaggagatgctactccttttacagatgtgacggtggacaatatcagtaaagct
cttcacagttgtggttatcaaatgcgtggattcgagaccatgtataatggtcacacgggc
aggcggctcagcgctatgatattccttggccccacatattaccaaagactgaagcacatg
gtcgacgacaagatccattcacgtggacggggcccagtgcagatcctcacaaggcagcca
gctgagggacggtctcgtgatggtggtctacgatttggagaaatggaacgagattgcatg
attgcccatggtgctgcccactttctgaaagaaagattgttcgaccagagtgatgcatat
agggttcatgtctgcgagcgttgtgggttaatagctattgcaaatctcaagaagaattcg
tttgagtgcaggggttgcaagaacaaaactgacattgttcaggtttacattccttatgcc
tgcaagctgctattccaagagctcatgtcaatggccatagcgccaagaatgctcacaaag
gacataaagccggccaaaaaccaaaagaagaaaggaggctga

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