Malus domestica (apple): 103446980
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Entry
103446980 CDS
T03194
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103446980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103446980
03110 Chaperones and folding catalysts [BR:
mdm03110
]
103446980
03029 Mitochondrial biogenesis [BR:
mdm03029
]
103446980
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mdm04147
]
103446980
Enzymes [BR:
mdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
103446980
Messenger RNA biogenesis [BR:
mdm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
103446980
Chaperones and folding catalysts [BR:
mdm03110
]
Heat shock proteins
HSP60 / Chaperonin
103446980
Mitochondrial biogenesis [BR:
mdm03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
103446980
Exosome [BR:
mdm04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
103446980
Exosomal proteins of other body fluids (saliva and urine)
103446980
Exosomal proteins of breast cancer cells
103446980
Exosomal proteins of colorectal cancer cells
103446980
Exosomal proteins of bladder cancer cells
103446980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
KH_PARP14_2
Motif
Other DBs
NCBI-GeneID:
103446980
NCBI-ProteinID:
XP_070664967
LinkDB
All DBs
Position
11:join(249399..249626,249712..249837,250194..250331,250413..250508,250650..250892,250980..251214,251383..251552,251638..251715,251806..251877,251985..252089,252206..252298,252389..252481,252590..252716,252800..252813)
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AA seq
605 aa
AA seq
DB search
MASTFAAMTSVGSLAAPSGRVIDRKFDNLSSHASFSSFSVSRRQNVALRRTRSPRICAMA
KELHFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVE
LEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIE
KTTRALVNELKLISKEVEDSELADVAAVSAGNNYEVGNMIAEALSKVGRKGVVTLEEGKS
AENSLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINILEEAIR
GGYPVVIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGDRKSQYLDDIAILTGGTVIR
EEVGLTLENAGKEVLGHASKVVLTKDSSTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYER
EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRL
ASKVDTIKDTLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNPKYGYN
AATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAVPAGNPMDN
SGYGY
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atggcatccacatttgcagccatgacttcagttggttccttggctgctcctagcggccgt
gtcattgacaggaaattcgacaacttgtcgtctcatgcttcattctcttcattctccgtc
tctagaaggcagaatgtggctttgaggaggacacggtctcccaggatctgtgccatggcc
aaggaattgcacttcaacaaggatggctctgccatcaagaaactacagactggtgtcaac
aagctcgccgaccttgttggggttacacttggtccaaagggaaggaatgtcgttctagag
agcaagtatggctcccccaaaattgttaacgatggtgtaaccgttgcaaaagaggttgag
ttggaggaccctgttgagaacattggagctaagttagtgagacaggcagctgccaagact
aatgacctagctggtgatggtacaaccacttctgttgttcttgcacaaggtcttattgct
gaaggtgtcaaggtggttgcagctggggcaaaccctgttttaatcacacgtggcattgaa
aagaccaccagagctctagtaaatgagcttaagttgatctctaaagaggttgaagacagt
gagctggcagatgtggcagctgttagtgcaggaaacaactatgaagtaggaaacatgatt
gccgaagctttgagcaaggtgggtaggaaaggtgtggtgacccttgaagagggaaagagc
gctgagaacagcctgtacgttgttgaaggaatgcaattcgatcgtggttatatctcacct
tactttgtcactgacagcgagaaaatggcagttgaatatgagaactgcaagttgcttctt
gttgataaaaagattacaaatgcaagggaccttattaacattttggaggaagctattaga
ggaggatacccagttgtaatcattgcagaagacattgaacaagaagctcttgcaactctt
gttgtaaacaagctaagaggagctcttaagattgctgcccttaaagctccagggtttggt
gatcgcaagagccagtaccttgatgatattgctattctaactggaggaactgttatcaga
gaggaggtaggactcacattagagaatgctggaaaggaggtccttggccatgcttcgaaa
gtggttcttacaaaggatagctccacaattgttggtgatggaagtacccaggaagcagtt
aacaagcgagttgcccaaattaagaacctcattgaggcggcagagcaggactatgaaaga
gaaaagctgaatgaaaggattgcaaaactatctggtggtgttgctgttatacaggttgga
gcacaaactgagacagagctgaaagaaaagaagctgagggtcgaagatgctctgaatgca
acgaaggcagctgttgaggaaggtattgttgttggaggtggatgcacacttctgaggtta
gcatcgaaggttgacacaatcaaagatactcttgataatgatgaagaaaaggttggagca
gatatcgttaaaagagctcttagttaccctctgaaattaattgccaagaatgctggtgta
aatggaagtgttgtcagtgagaaggtgctttcaaatgacaatcccaagtatggatacaat
gctgccactggaaactatgaagatttaatggctgctggaatcattgatccaaccaaggtg
gtgagatgttgcctggagcatgcatcctctgttgcgaaaactttcttaatgtcagactgt
gtagttgtcgagattaaagagccagaaccagcagtgcccgccggcaaccccatggacaac
tcaggctacggttactaa
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