Malus domestica (apple): 103447144
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Entry
103447144 CDS
T03194
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103447144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103447144
Enzymes [BR:
mdm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
103447144
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103447144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
PHD_ash2p_like
Motif
Other DBs
NCBI-GeneID:
103447144
NCBI-ProteinID:
XP_028943758
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All DBs
Position
11:complement(join(2628712..2629549,2630062..2630332,2630412..2630538,2631062..2631175,2631948..2632279,2632408..2632538,2633026..2633390))
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AA seq
725 aa
AA seq
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MNTHRPVRALSRAISRALSHSSSSSSSVQQQSSTFPLKNVTKSNFEPALADLRRHVAAAD
FVAIDLEMTGITSAPWRDSLEFDRADVCYLKVKDSAEKFAVLQFGVCPFRWDSSKRSFIA
HPHNFYIFPRQELPVAGPTYEFLCQTTSIDFLAKYQFDFNVCIHEGISYLSRGQESEALR
RLSLTYDDELLTRCSNLKEPVHMPVVKIADTLFAERMKNTFTEWRDGLLNLRSSNGGFQF
QQNSNDSQQLQTIFFKMRPALSLKGFTSHQLRLIQMVMRKHFQDLSYVQVNGEKSCQQQL
VVRTDSKDDRDLLLKEVKDEHRREAEVKVQAAVGFRHVIDLLSSEQKLIVGHNCFLDIAH
IYNKFLGPLPSTAEEFVSAVNKYFPHIIDTKVLLNTDNVLQQRMKKSRTSLSSAFALLCP
QIALGKKSTDSEVQLCVKVEVQVDDLRSSNWNSGAKHEAGYDAFMTGCVFAQTCSHLGID
FQACLSSEKLPHNEKLQKQINLLYLSWSNGDIIDLTTGKKKAMSSGYNNHKKRYAQIMFE
NIALIWGFPSKLKARDIRECITKVFGPTSVTSVYHLDETAVFIQFSKEKFVSEFLALKET
LERSDGPVSVLHPLTGLLEGGSTRAANYETYKEICSSASAKVLFADQAEAVGIKWKTKLV
ESKEASETLKREIFDEKSDMNPASKSEKLRSNTDNAQDDPLRGRLSHYKIIDTLITSEGD
RIRTN
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgaacactcaccgcccggtgagggcactgtcacgtgcgatatcacgtgccctatcccac
tcctcttcctcttcgtcgtccgtacaacaacaatcctccaccttccctctaaaaaacgtg
accaaatccaacttcgagccggccctcgccgacctgcgccgccatgtcgccgccgccgat
ttcgtggccatcgatctcgagatgaccggaatcaccagcgctccgtggcgtgactccctg
gaattcgaccgcgccgacgtctgctaccttaaggtcaaggactcggccgagaagttcgcc
gtgcttcagttcggagtttgccccttccgctgggactcctccaagcgctccttcattgct
catccgcacaatttttacatttttccgcgtcaagagcttccggttgcaggccccacttat
gagtttctttgccagacaacatcgattgatttcttagctaaataccagttcgattttaat
gtctgcatacatgaaggaatatcttatttatccagagggcaggaaagtgaggcactgaga
cgtttgagcttgacatatgatgatgagttattgactagatgttcaaacttgaaagaacct
gtgcacatgccagtggtcaagattgctgacactctctttgctgaacggatgaagaacaca
ttcactgaatggcgtgatggtttgttgaacttgagaagtagtaatggaggattccaattt
cagcaaaactcaaatgattcccaacagttacaaaccattttcttcaagatgcgtccagct
cttagtttgaagggattcacttctcatcagcttaggttgattcaaatggtcatgagaaag
catttccaagatctttcttatgttcaggtaaatggtgaaaagtcgtgtcaacagcaacta
gttgtgcggacagattccaaggatgacagggatttgcttctgaaagaggttaaggatgaa
catcgtagggaagcagaggtgaaagttcaagctgcagttgggtttcgtcatgttattgac
cttctttcctcagaacaaaagttgattgttggtcacaattgctttcttgatattgcccat
atatacaacaaattcttgggacctctaccttcgactgctgaggaatttgtctctgctgtt
aacaagtattttccacacatcattgacaccaaagtactgttgaatacagataatgtgctc
caacaacggatgaagaagtccagaacatcactttcgtcagcatttgctttgttatgcccg
caaattgctcttgggaagaaaagcactgattcagaagtccaattgtgtgtcaaagttgaa
gttcaggtggatgatttgaggtcctccaactggaattctggagccaaacatgaagcagga
tacgatgcttttatgacaggctgtgtctttgctcagacatgcagtcatctcggaattgat
tttcaggcttgtttgtcatctgaaaagttgccccacaatgagaagctccagaagcaaatc
aaccttttatacctcagttggagtaatggagacattattgatttaaccaccggcaagaag
aaagcaatgtcttcggggtataataatcacaaaaagaggtacgcgcagattatgtttgag
aacattgctttaatctggggattcccatcaaaactcaaggcacgagatataagggagtgc
atcacaaaagtctttggcccgacctctgtcacgtctgtctaccacttggatgaaactgca
gtattcattcagtttagcaaggaaaaatttgtctctgaatttctggcgttgaaggaaaca
ttagagagaagtgatggtccagtctcggttttgcatcccctcacgggacttttggaaggt
ggaagcacccgagctgctaattatgaaacttacaaagaaatctgcagttcagctagcgca
aaagtcttgtttgcagatcaggctgaggcagttggtattaaatggaaaactaaattggtt
gaatccaaggaagcatcagagaccctaaaacgagagatcttcgatgagaaaagtgatatg
aatcctgcttcgaagtctgaaaaactgagaagtaacacagataatgcgcaagatgatccg
ttgcgtgggcgtctctcacattacaagatcatagacactttaattacttctgaaggcgat
cgaatcagaactaattag
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